Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC16.13■□□□□ 0.17
HDDC3Q8N4P3 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC16.13■□□□□ 0.17
HDDC3Q8N4P3 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC16.13■□□□□ 0.17
HDDC3Q8N4P3 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
HDDC3Q8N4P3 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
HDDC3Q8N4P3 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HDDC3Q8N4P3 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC16.12■□□□□ 0.17
HDDC3Q8N4P3 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HDDC3Q8N4P3 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
HDDC3Q8N4P3 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC16.12■□□□□ 0.17
HDDC3Q8N4P3 AL691432.1-201ENST00000596308 1422 ntBASIC16.12■□□□□ 0.17
HDDC3Q8N4P3 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
HDDC3Q8N4P3 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
HDDC3Q8N4P3 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC16.12■□□□□ 0.17
HDDC3Q8N4P3 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC16.12■□□□□ 0.17
HDDC3Q8N4P3 AC079776.1-201ENST00000401540 1152 ntBASIC16.12■□□□□ 0.17
HDDC3Q8N4P3 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC16.12■□□□□ 0.17
HDDC3Q8N4P3 TTTY23B-201ENST00000442790 549 ntBASIC16.12■□□□□ 0.17
HDDC3Q8N4P3 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HDDC3Q8N4P3 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC16.12■□□□□ 0.17
HDDC3Q8N4P3 AC055876.2-201ENST00000531834 546 ntBASIC16.12■□□□□ 0.17
HDDC3Q8N4P3 TPRX2P-201ENST00000535362 881 ntBASIC16.12■□□□□ 0.17
HDDC3Q8N4P3 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
HDDC3Q8N4P3 CHCHD2P3-201ENST00000603038 451 ntBASIC16.12■□□□□ 0.17
HDDC3Q8N4P3 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC16.12■□□□□ 0.17
HDDC3Q8N4P3 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
HDDC3Q8N4P3 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
HDDC3Q8N4P3 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HDDC3Q8N4P3 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
HDDC3Q8N4P3 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HDDC3Q8N4P3 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC16.12■□□□□ 0.17
HDDC3Q8N4P3 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC16.12■□□□□ 0.17
HDDC3Q8N4P3 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
HDDC3Q8N4P3 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HDDC3Q8N4P3 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
HDDC3Q8N4P3 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HDDC3Q8N4P3 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HDDC3Q8N4P3 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HDDC3Q8N4P3 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC16.11■□□□□ 0.17
HDDC3Q8N4P3 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
HDDC3Q8N4P3 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
HDDC3Q8N4P3 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
HDDC3Q8N4P3 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HDDC3Q8N4P3 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HDDC3Q8N4P3 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
HDDC3Q8N4P3 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
HDDC3Q8N4P3 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
HDDC3Q8N4P3 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC16.11■□□□□ 0.17
HDDC3Q8N4P3 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HDDC3Q8N4P3 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC16.11■□□□□ 0.17
HDDC3Q8N4P3 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
HDDC3Q8N4P3 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HDDC3Q8N4P3 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC16.11■□□□□ 0.17
HDDC3Q8N4P3 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HDDC3Q8N4P3 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HDDC3Q8N4P3 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HDDC3Q8N4P3 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HDDC3Q8N4P3 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
HDDC3Q8N4P3 AC004987.2-201ENST00000395959 1148 ntBASIC16.11■□□□□ 0.17
HDDC3Q8N4P3 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
HDDC3Q8N4P3 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC16.11■□□□□ 0.17
HDDC3Q8N4P3 HIST3H2BA-201ENST00000436555 524 ntBASIC16.11■□□□□ 0.17
HDDC3Q8N4P3 AC234783.1-201ENST00000441761 496 ntBASIC16.11■□□□□ 0.17
HDDC3Q8N4P3 ELP6-209ENST00000446787 894 ntTSL 3 BASIC16.11■□□□□ 0.17
HDDC3Q8N4P3 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC16.11■□□□□ 0.17
HDDC3Q8N4P3 AC092658.1-201ENST00000505836 891 ntBASIC16.11■□□□□ 0.17
HDDC3Q8N4P3 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC16.11■□□□□ 0.17
HDDC3Q8N4P3 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC16.11■□□□□ 0.17
HDDC3Q8N4P3 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC16.11■□□□□ 0.17
HDDC3Q8N4P3 AC243562.2-201ENST00000561247 970 ntBASIC16.11■□□□□ 0.17
HDDC3Q8N4P3 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HDDC3Q8N4P3 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
HDDC3Q8N4P3 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC16.11■□□□□ 0.17
HDDC3Q8N4P3 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC16.11■□□□□ 0.17
HDDC3Q8N4P3 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC16.11■□□□□ 0.17
HDDC3Q8N4P3 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HDDC3Q8N4P3 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
HDDC3Q8N4P3 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
HDDC3Q8N4P3 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
HDDC3Q8N4P3 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC16.11■□□□□ 0.17
HDDC3Q8N4P3 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC16.11■□□□□ 0.17
HDDC3Q8N4P3 AD000864.1-201ENST00000624076 2295 ntBASIC16.11■□□□□ 0.17
HDDC3Q8N4P3 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC16.11■□□□□ 0.17
HDDC3Q8N4P3 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HDDC3Q8N4P3 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
HDDC3Q8N4P3 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC16.11■□□□□ 0.17
HDDC3Q8N4P3 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HDDC3Q8N4P3 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HDDC3Q8N4P3 AC011676.5-201ENST00000624864 2660 ntBASIC16.11■□□□□ 0.17
HDDC3Q8N4P3 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC16.1■□□□□ 0.17
HDDC3Q8N4P3 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HDDC3Q8N4P3 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC16.1■□□□□ 0.17
HDDC3Q8N4P3 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
HDDC3Q8N4P3 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC16.1■□□□□ 0.17
HDDC3Q8N4P3 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HDDC3Q8N4P3 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HDDC3Q8N4P3 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC16.1■□□□□ 0.17
HDDC3Q8N4P3 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
HDDC3Q8N4P3 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC16.1■□□□□ 0.17
HDDC3Q8N4P3 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 46.6 ms