Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC19.45■□□□□ 0.7
VPS53Q5VIR6 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC19.45■□□□□ 0.7
VPS53Q5VIR6 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
VPS53Q5VIR6 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS53Q5VIR6 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
VPS53Q5VIR6 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC19.45■□□□□ 0.7
VPS53Q5VIR6 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS53Q5VIR6 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
VPS53Q5VIR6 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
VPS53Q5VIR6 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC19.45■□□□□ 0.7
VPS53Q5VIR6 CDC14C-201ENST00000428251 1719 ntBASIC19.45■□□□□ 0.7
VPS53Q5VIR6 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
VPS53Q5VIR6 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
VPS53Q5VIR6 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS53Q5VIR6 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS53Q5VIR6 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS53Q5VIR6 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC19.44■□□□□ 0.7
VPS53Q5VIR6 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
VPS53Q5VIR6 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS53Q5VIR6 AC112504.1-201ENST00000623415 1841 ntBASIC19.44■□□□□ 0.7
VPS53Q5VIR6 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC19.44■□□□□ 0.7
VPS53Q5VIR6 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS53Q5VIR6 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
VPS53Q5VIR6 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
VPS53Q5VIR6 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC19.44■□□□□ 0.7
VPS53Q5VIR6 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC19.44■□□□□ 0.7
VPS53Q5VIR6 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS53Q5VIR6 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS53Q5VIR6 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
VPS53Q5VIR6 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
VPS53Q5VIR6 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS53Q5VIR6 MIR648-201ENST00000385046 94 ntBASIC19.44■□□□□ 0.7
VPS53Q5VIR6 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS53Q5VIR6 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC19.44■□□□□ 0.7
VPS53Q5VIR6 Z92544.3-201ENST00000624747 417 ntBASIC19.44■□□□□ 0.7
VPS53Q5VIR6 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC19.44■□□□□ 0.7
VPS53Q5VIR6 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC19.44■□□□□ 0.7
VPS53Q5VIR6 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS53Q5VIR6 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS53Q5VIR6 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC19.44■□□□□ 0.7
VPS53Q5VIR6 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS53Q5VIR6 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS53Q5VIR6 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
VPS53Q5VIR6 FUK-207ENST00000571514 3054 ntTSL 2 BASIC19.44■□□□□ 0.7
VPS53Q5VIR6 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS53Q5VIR6 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS53Q5VIR6 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
VPS53Q5VIR6 LTF-203ENST00000426532 2494 ntTSL 2 BASIC19.44■□□□□ 0.7
VPS53Q5VIR6 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS53Q5VIR6 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
VPS53Q5VIR6 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
VPS53Q5VIR6 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC19.43■□□□□ 0.7
VPS53Q5VIR6 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS53Q5VIR6 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC19.43■□□□□ 0.7
VPS53Q5VIR6 LINC02447-202ENST00000501888 2146 ntBASIC19.43■□□□□ 0.7
VPS53Q5VIR6 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC19.43■□□□□ 0.7
VPS53Q5VIR6 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC19.43■□□□□ 0.7
VPS53Q5VIR6 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS53Q5VIR6 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
VPS53Q5VIR6 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS53Q5VIR6 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC19.43■□□□□ 0.7
VPS53Q5VIR6 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS53Q5VIR6 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
VPS53Q5VIR6 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS53Q5VIR6 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
VPS53Q5VIR6 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS53Q5VIR6 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS53Q5VIR6 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS53Q5VIR6 AC105917.1-201ENST00000506637 2539 ntBASIC19.43■□□□□ 0.7
VPS53Q5VIR6 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS53Q5VIR6 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC19.43■□□□□ 0.7
VPS53Q5VIR6 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
VPS53Q5VIR6 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC19.43■□□□□ 0.7
VPS53Q5VIR6 AL512356.2-201ENST00000546955 174 ntBASIC19.43■□□□□ 0.7
VPS53Q5VIR6 VPS29-207ENST00000549970 818 ntTSL 3 BASIC19.43■□□□□ 0.7
VPS53Q5VIR6 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC19.43■□□□□ 0.7
VPS53Q5VIR6 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC19.43■□□□□ 0.7
VPS53Q5VIR6 MIR4453-201ENST00000584019 89 ntBASIC19.43■□□□□ 0.7
VPS53Q5VIR6 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS53Q5VIR6 MIR4321-201ENST00000592276 80 ntBASIC19.43■□□□□ 0.7
VPS53Q5VIR6 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC19.43■□□□□ 0.7
VPS53Q5VIR6 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC19.43■□□□□ 0.7
VPS53Q5VIR6 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS53Q5VIR6 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS53Q5VIR6 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS53Q5VIR6 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC19.43■□□□□ 0.7
VPS53Q5VIR6 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
VPS53Q5VIR6 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
VPS53Q5VIR6 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS53Q5VIR6 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
VPS53Q5VIR6 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS53Q5VIR6 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
VPS53Q5VIR6 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS53Q5VIR6 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
VPS53Q5VIR6 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
VPS53Q5VIR6 AC069224.1-201ENST00000566372 1715 ntBASIC19.42■□□□□ 0.7
VPS53Q5VIR6 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
VPS53Q5VIR6 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS53Q5VIR6 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS53Q5VIR6 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC19.42■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms