Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
USP41Q3LFD5 AC098850.1-201ENST00000419919 790 ntBASIC17.07■□□□□ 0.32
USP41Q3LFD5 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
USP41Q3LFD5 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC17.07■□□□□ 0.32
USP41Q3LFD5 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC17.07■□□□□ 0.32
USP41Q3LFD5 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC17.07■□□□□ 0.32
USP41Q3LFD5 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
USP41Q3LFD5 NEU3-203ENST00000529024 581 ntTSL 3 BASIC17.07■□□□□ 0.32
USP41Q3LFD5 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC17.07■□□□□ 0.32
USP41Q3LFD5 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC17.07■□□□□ 0.32
USP41Q3LFD5 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC17.07■□□□□ 0.32
USP41Q3LFD5 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
USP41Q3LFD5 TMEM261P1-201ENST00000604899 340 ntBASIC17.07■□□□□ 0.32
USP41Q3LFD5 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
USP41Q3LFD5 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
USP41Q3LFD5 ACE-204ENST00000428043 5120 ntTSL 2 BASIC17.07■□□□□ 0.32
USP41Q3LFD5 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC17.07■□□□□ 0.32
USP41Q3LFD5 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
USP41Q3LFD5 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC17.07■□□□□ 0.32
USP41Q3LFD5 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC17.07■□□□□ 0.32
USP41Q3LFD5 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
USP41Q3LFD5 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
USP41Q3LFD5 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
USP41Q3LFD5 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
USP41Q3LFD5 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC17.07■□□□□ 0.32
USP41Q3LFD5 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
USP41Q3LFD5 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
USP41Q3LFD5 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
USP41Q3LFD5 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
USP41Q3LFD5 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
USP41Q3LFD5 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
USP41Q3LFD5 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
USP41Q3LFD5 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
USP41Q3LFD5 KRT8P37-201ENST00000451609 1420 ntBASIC17.06■□□□□ 0.32
USP41Q3LFD5 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
USP41Q3LFD5 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
USP41Q3LFD5 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
USP41Q3LFD5 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
USP41Q3LFD5 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
USP41Q3LFD5 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC17.06■□□□□ 0.32
USP41Q3LFD5 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC17.06■□□□□ 0.32
USP41Q3LFD5 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC17.06■□□□□ 0.32
USP41Q3LFD5 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC17.06■□□□□ 0.32
USP41Q3LFD5 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC17.06■□□□□ 0.32
USP41Q3LFD5 EEF1DP4-201ENST00000446006 880 ntBASIC17.06■□□□□ 0.32
USP41Q3LFD5 RN7SL837P-201ENST00000463010 287 ntBASIC17.06■□□□□ 0.32
USP41Q3LFD5 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC17.06■□□□□ 0.32
USP41Q3LFD5 AC104596.2-201ENST00000512793 793 ntBASIC17.06■□□□□ 0.32
USP41Q3LFD5 HILS1-202ENST00000545329 423 ntBASIC17.06■□□□□ 0.32
USP41Q3LFD5 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
USP41Q3LFD5 AC106886.1-201ENST00000568660 600 ntBASIC17.06■□□□□ 0.32
USP41Q3LFD5 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC17.06■□□□□ 0.32
USP41Q3LFD5 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC17.06■□□□□ 0.32
USP41Q3LFD5 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
USP41Q3LFD5 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC17.06■□□□□ 0.32
USP41Q3LFD5 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC17.06■□□□□ 0.32
USP41Q3LFD5 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC17.06■□□□□ 0.32
USP41Q3LFD5 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
USP41Q3LFD5 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
USP41Q3LFD5 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
USP41Q3LFD5 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
USP41Q3LFD5 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
USP41Q3LFD5 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
USP41Q3LFD5 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
USP41Q3LFD5 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
USP41Q3LFD5 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
USP41Q3LFD5 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC17.06■□□□□ 0.32
USP41Q3LFD5 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
USP41Q3LFD5 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
USP41Q3LFD5 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC17.06■□□□□ 0.32
USP41Q3LFD5 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
USP41Q3LFD5 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC17.06■□□□□ 0.32
USP41Q3LFD5 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
USP41Q3LFD5 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
USP41Q3LFD5 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
USP41Q3LFD5 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC17.05■□□□□ 0.32
USP41Q3LFD5 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
USP41Q3LFD5 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC17.05■□□□□ 0.32
USP41Q3LFD5 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
USP41Q3LFD5 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC17.05■□□□□ 0.32
USP41Q3LFD5 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
USP41Q3LFD5 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
USP41Q3LFD5 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC17.05■□□□□ 0.32
USP41Q3LFD5 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC17.05■□□□□ 0.32
USP41Q3LFD5 AC007274.1-201ENST00000439805 662 ntBASIC17.05■□□□□ 0.32
USP41Q3LFD5 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
USP41Q3LFD5 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC17.05■□□□□ 0.32
USP41Q3LFD5 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC17.05■□□□□ 0.32
USP41Q3LFD5 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC17.05■□□□□ 0.32
USP41Q3LFD5 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC17.05■□□□□ 0.32
USP41Q3LFD5 GLI4-203ENST00000517468 963 ntTSL 5 BASIC17.05■□□□□ 0.32
USP41Q3LFD5 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC17.05■□□□□ 0.32
USP41Q3LFD5 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC17.05■□□□□ 0.32
USP41Q3LFD5 IFT20-216ENST00000588477 774 ntTSL 5 BASIC17.05■□□□□ 0.32
USP41Q3LFD5 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
USP41Q3LFD5 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
USP41Q3LFD5 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC17.05■□□□□ 0.32
USP41Q3LFD5 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
USP41Q3LFD5 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
USP41Q3LFD5 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC17.05■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 59.5 ms