Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HDAC4P56524 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC16.86■□□□□ 0.29
HDAC4P56524 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
HDAC4P56524 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
HDAC4P56524 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HDAC4P56524 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
HDAC4P56524 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HDAC4P56524 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC16.85■□□□□ 0.29
HDAC4P56524 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
HDAC4P56524 FUK-207ENST00000571514 3054 ntTSL 2 BASIC16.85■□□□□ 0.29
HDAC4P56524 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
HDAC4P56524 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC16.85■□□□□ 0.29
HDAC4P56524 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HDAC4P56524 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC16.85■□□□□ 0.29
HDAC4P56524 AC023141.5-201ENST00000458585 616 ntBASIC16.85■□□□□ 0.29
HDAC4P56524 GATD1-206ENST00000526325 756 ntTSL 5 BASIC16.85■□□□□ 0.29
HDAC4P56524 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
HDAC4P56524 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
HDAC4P56524 AL596442.2-201ENST00000610240 980 ntBASIC16.85■□□□□ 0.29
HDAC4P56524 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC16.85■□□□□ 0.29
HDAC4P56524 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
HDAC4P56524 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HDAC4P56524 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HDAC4P56524 GOLGA6L17P-202ENST00000614358 1398 ntBASIC16.85■□□□□ 0.29
HDAC4P56524 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
HDAC4P56524 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
HDAC4P56524 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HDAC4P56524 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC16.85■□□□□ 0.29
HDAC4P56524 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
HDAC4P56524 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC16.85■□□□□ 0.29
HDAC4P56524 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
HDAC4P56524 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
HDAC4P56524 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
HDAC4P56524 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HDAC4P56524 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC16.85■□□□□ 0.29
HDAC4P56524 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HDAC4P56524 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
HDAC4P56524 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
HDAC4P56524 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC16.84■□□□□ 0.29
HDAC4P56524 ACE-204ENST00000428043 5120 ntTSL 2 BASIC16.84■□□□□ 0.29
HDAC4P56524 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC16.84■□□□□ 0.29
HDAC4P56524 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HDAC4P56524 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC16.84■□□□□ 0.29
HDAC4P56524 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
HDAC4P56524 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC16.84■□□□□ 0.29
HDAC4P56524 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
HDAC4P56524 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HDAC4P56524 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HDAC4P56524 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HDAC4P56524 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HDAC4P56524 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
HDAC4P56524 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
HDAC4P56524 SPDYE14P-201ENST00000442619 822 ntBASIC16.84■□□□□ 0.29
HDAC4P56524 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC16.84■□□□□ 0.29
HDAC4P56524 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HDAC4P56524 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC16.84■□□□□ 0.29
HDAC4P56524 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC16.84■□□□□ 0.29
HDAC4P56524 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC16.84■□□□□ 0.29
HDAC4P56524 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC16.84■□□□□ 0.29
HDAC4P56524 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HDAC4P56524 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC16.84■□□□□ 0.29
HDAC4P56524 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HDAC4P56524 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC16.84■□□□□ 0.29
HDAC4P56524 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
HDAC4P56524 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
HDAC4P56524 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC16.84■□□□□ 0.29
HDAC4P56524 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HDAC4P56524 ACE-203ENST00000413513 2237 ntTSL 2 BASIC16.84■□□□□ 0.29
HDAC4P56524 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
HDAC4P56524 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC16.84■□□□□ 0.29
HDAC4P56524 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
HDAC4P56524 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC16.84■□□□□ 0.29
HDAC4P56524 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
HDAC4P56524 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
HDAC4P56524 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
HDAC4P56524 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.29
HDAC4P56524 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.29
HDAC4P56524 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
HDAC4P56524 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HDAC4P56524 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
HDAC4P56524 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
HDAC4P56524 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
HDAC4P56524 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
HDAC4P56524 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HDAC4P56524 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HDAC4P56524 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
HDAC4P56524 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC16.83■□□□□ 0.28
HDAC4P56524 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
HDAC4P56524 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
HDAC4P56524 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC16.83■□□□□ 0.28
HDAC4P56524 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
HDAC4P56524 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC16.83■□□□□ 0.28
HDAC4P56524 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC16.83■□□□□ 0.28
HDAC4P56524 RBPMS2P1-201ENST00000437762 623 ntBASIC16.83■□□□□ 0.28
HDAC4P56524 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC16.83■□□□□ 0.28
HDAC4P56524 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC16.83■□□□□ 0.28
HDAC4P56524 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC16.83■□□□□ 0.28
HDAC4P56524 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC16.83■□□□□ 0.28
HDAC4P56524 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC16.83■□□□□ 0.28
HDAC4P56524 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC16.83■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 52.3 ms