Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC21.97■■□□□ 1.11
MSH6P52701 DRD5P1-201ENST00000456605 1438 ntBASIC21.97■■□□□ 1.11
MSH6P52701 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
MSH6P52701 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
MSH6P52701 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC21.97■■□□□ 1.11
MSH6P52701 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
MSH6P52701 NDUFB8-201ENST00000299166 671 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
MSH6P52701 AC016700.1-201ENST00000429424 312 ntBASIC21.97■■□□□ 1.11
MSH6P52701 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC21.97■■□□□ 1.11
MSH6P52701 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC21.97■■□□□ 1.11
MSH6P52701 KRT18P43-201ENST00000469825 1281 ntBASIC21.97■■□□□ 1.11
MSH6P52701 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC21.97■■□□□ 1.11
MSH6P52701 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC21.97■■□□□ 1.11
MSH6P52701 RNA5SP486-201ENST00000515961 83 ntBASIC21.97■■□□□ 1.11
MSH6P52701 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC21.97■■□□□ 1.11
MSH6P52701 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC21.97■■□□□ 1.11
MSH6P52701 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC21.97■■□□□ 1.11
MSH6P52701 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC21.97■■□□□ 1.11
MSH6P52701 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC21.97■■□□□ 1.11
MSH6P52701 AC132938.4-201ENST00000623835 848 ntBASIC21.97■■□□□ 1.11
MSH6P52701 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC21.97■■□□□ 1.11
MSH6P52701 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC21.97■■□□□ 1.11
MSH6P52701 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC21.97■■□□□ 1.11
MSH6P52701 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC21.97■■□□□ 1.11
MSH6P52701 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC21.96■■□□□ 1.11
MSH6P52701 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC21.96■■□□□ 1.11
MSH6P52701 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC21.96■■□□□ 1.11
MSH6P52701 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC21.96■■□□□ 1.11
MSH6P52701 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
MSH6P52701 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
MSH6P52701 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
MSH6P52701 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC21.96■■□□□ 1.11
MSH6P52701 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
MSH6P52701 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC21.96■■□□□ 1.11
MSH6P52701 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC21.96■■□□□ 1.11
MSH6P52701 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
MSH6P52701 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC21.96■■□□□ 1.11
MSH6P52701 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC21.96■■□□□ 1.11
MSH6P52701 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC21.96■■□□□ 1.11
MSH6P52701 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC21.96■■□□□ 1.11
MSH6P52701 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC21.96■■□□□ 1.11
MSH6P52701 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC21.96■■□□□ 1.11
MSH6P52701 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC21.96■■□□□ 1.11
MSH6P52701 AL133466.1-201ENST00000447582 150 ntBASIC21.96■■□□□ 1.11
MSH6P52701 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC21.96■■□□□ 1.11
MSH6P52701 AP000894.2-204ENST00000577358 473 ntTSL 5 BASIC21.96■■□□□ 1.11
MSH6P52701 AC015910.1-201ENST00000579400 975 ntBASIC21.96■■□□□ 1.11
MSH6P52701 AC010323.1-201ENST00000598884 580 ntAPPRIS P1 TSL 4 BASIC21.96■■□□□ 1.11
MSH6P52701 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC21.96■■□□□ 1.11
MSH6P52701 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
MSH6P52701 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC21.96■■□□□ 1.11
MSH6P52701 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
MSH6P52701 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC21.95■■□□□ 1.11
MSH6P52701 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.11
MSH6P52701 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC21.95■■□□□ 1.11
MSH6P52701 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.11
MSH6P52701 CPA5-201ENST00000393213 1444 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
MSH6P52701 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC21.95■■□□□ 1.1
MSH6P52701 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC21.95■■□□□ 1.1
MSH6P52701 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
MSH6P52701 AC008267.1-201ENST00000474858 1069 ntBASIC21.95■■□□□ 1.1
MSH6P52701 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC21.95■■□□□ 1.1
MSH6P52701 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.1
MSH6P52701 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC21.95■■□□□ 1.1
MSH6P52701 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
MSH6P52701 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC21.95■■□□□ 1.1
MSH6P52701 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC21.95■■□□□ 1.1
MSH6P52701 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
MSH6P52701 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
MSH6P52701 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC21.95■■□□□ 1.1
MSH6P52701 LINC01144-201ENST00000626198 1710 ntBASIC21.95■■□□□ 1.1
MSH6P52701 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
MSH6P52701 BCL2L13-206ENST00000399782 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
MSH6P52701 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC21.94■■□□□ 1.1
MSH6P52701 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC21.94■■□□□ 1.1
MSH6P52701 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC21.94■■□□□ 1.1
MSH6P52701 AL121723.1-201ENST00000445194 1519 ntBASIC21.94■■□□□ 1.1
MSH6P52701 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
MSH6P52701 TMEM177-203ENST00000409951 1216 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
MSH6P52701 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC21.94■■□□□ 1.1
MSH6P52701 AP000320.1-201ENST00000440403 471 ntTSL 3 BASIC21.94■■□□□ 1.1
MSH6P52701 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
MSH6P52701 AP005019.2-201ENST00000615104 511 ntBASIC21.94■■□□□ 1.1
MSH6P52701 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC21.94■■□□□ 1.1
MSH6P52701 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
MSH6P52701 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
MSH6P52701 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC21.94■■□□□ 1.1
MSH6P52701 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
MSH6P52701 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
MSH6P52701 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC21.93■■□□□ 1.1
MSH6P52701 CD8B2-202ENST00000417670 633 ntBASIC21.93■■□□□ 1.1
MSH6P52701 GDAP1-202ENST00000434412 1228 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
MSH6P52701 HILPDA-202ENST00000435296 785 ntAPPRIS P1 TSL 2 BASIC21.93■■□□□ 1.1
MSH6P52701 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
MSH6P52701 SPTLC1P5-201ENST00000450718 252 ntBASIC21.93■■□□□ 1.1
MSH6P52701 ATP6V0CP2-201ENST00000469409 207 ntBASIC21.93■■□□□ 1.1
MSH6P52701 MCPH1-AS1-203ENST00000525186 869 ntTSL 3 BASIC21.93■■□□□ 1.1
MSH6P52701 FGFR3P5-201ENST00000564496 886 ntBASIC21.93■■□□□ 1.1
MSH6P52701 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC21.93■■□□□ 1.1
MSH6P52701 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC21.93■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms