Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC16.7■□□□□ 0.26
PTPN9P43378 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC16.7■□□□□ 0.26
PTPN9P43378 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PTPN9P43378 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PTPN9P43378 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC16.7■□□□□ 0.26
PTPN9P43378 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC16.7■□□□□ 0.26
PTPN9P43378 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PTPN9P43378 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
PTPN9P43378 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
PTPN9P43378 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
PTPN9P43378 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC16.7■□□□□ 0.26
PTPN9P43378 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC16.7■□□□□ 0.26
PTPN9P43378 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
PTPN9P43378 VPS29-207ENST00000549970 818 ntTSL 3 BASIC16.7■□□□□ 0.26
PTPN9P43378 AC025678.2-201ENST00000562061 970 ntBASIC16.7■□□□□ 0.26
PTPN9P43378 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC16.7■□□□□ 0.26
PTPN9P43378 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PTPN9P43378 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC16.7■□□□□ 0.26
PTPN9P43378 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PTPN9P43378 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PTPN9P43378 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC16.7■□□□□ 0.26
PTPN9P43378 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PTPN9P43378 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
PTPN9P43378 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PTPN9P43378 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC16.7■□□□□ 0.26
PTPN9P43378 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
PTPN9P43378 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC16.7■□□□□ 0.26
PTPN9P43378 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTPN9P43378 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
PTPN9P43378 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTPN9P43378 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
PTPN9P43378 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTPN9P43378 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTPN9P43378 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
PTPN9P43378 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTPN9P43378 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTPN9P43378 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
PTPN9P43378 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC16.69■□□□□ 0.26
PTPN9P43378 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTPN9P43378 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
PTPN9P43378 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTPN9P43378 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
PTPN9P43378 KLK8-202ENST00000320838 456 ntTSL 5 BASIC16.69■□□□□ 0.26
PTPN9P43378 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTPN9P43378 HNRNPFP1-201ENST00000391730 1133 ntBASIC16.69■□□□□ 0.26
PTPN9P43378 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTPN9P43378 CNN2P2-201ENST00000443536 909 ntBASIC16.69■□□□□ 0.26
PTPN9P43378 CNN2P3-201ENST00000450201 906 ntBASIC16.69■□□□□ 0.26
PTPN9P43378 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTPN9P43378 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
PTPN9P43378 SLBP-205ENST00000488267 987 ntTSL 2 BASIC16.69■□□□□ 0.26
PTPN9P43378 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
PTPN9P43378 SUOX-214ENST00000551841 906 ntTSL 3 BASIC16.69■□□□□ 0.26
PTPN9P43378 AL450472.2-201ENST00000603663 1156 ntBASIC16.69■□□□□ 0.26
PTPN9P43378 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
PTPN9P43378 AL136317.3-201ENST00000618497 906 ntBASIC16.69■□□□□ 0.26
PTPN9P43378 Z92544.3-201ENST00000624747 417 ntBASIC16.69■□□□□ 0.26
PTPN9P43378 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC16.69■□□□□ 0.26
PTPN9P43378 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTPN9P43378 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
PTPN9P43378 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC16.69■□□□□ 0.26
PTPN9P43378 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC16.69■□□□□ 0.26
PTPN9P43378 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTPN9P43378 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTPN9P43378 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
PTPN9P43378 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC16.68■□□□□ 0.26
PTPN9P43378 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
PTPN9P43378 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PTPN9P43378 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
PTPN9P43378 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
PTPN9P43378 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC16.68■□□□□ 0.26
PTPN9P43378 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PTPN9P43378 KRT8P12-202ENST00000472924 1397 ntBASIC16.68■□□□□ 0.26
PTPN9P43378 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PTPN9P43378 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PTPN9P43378 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC16.68■□□□□ 0.26
PTPN9P43378 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PTPN9P43378 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
PTPN9P43378 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PTPN9P43378 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PTPN9P43378 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PTPN9P43378 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PTPN9P43378 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PTPN9P43378 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC16.68■□□□□ 0.26
PTPN9P43378 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC16.68■□□□□ 0.26
PTPN9P43378 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC16.68■□□□□ 0.26
PTPN9P43378 ELP6-209ENST00000446787 894 ntTSL 3 BASIC16.68■□□□□ 0.26
PTPN9P43378 PPP6R2P1-201ENST00000450880 1275 ntBASIC16.68■□□□□ 0.26
PTPN9P43378 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC16.68■□□□□ 0.26
PTPN9P43378 PHKG1P2-201ENST00000457537 863 ntBASIC16.68■□□□□ 0.26
PTPN9P43378 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC16.68■□□□□ 0.26
PTPN9P43378 FXR1-221ENST00000491674 365 ntTSL 2 BASIC16.68■□□□□ 0.26
PTPN9P43378 SATB1-217ENST00000493952 626 ntTSL 3 BASIC16.68■□□□□ 0.26
PTPN9P43378 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC16.68■□□□□ 0.26
PTPN9P43378 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC16.68■□□□□ 0.26
PTPN9P43378 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC16.68■□□□□ 0.26
PTPN9P43378 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC16.68■□□□□ 0.26
PTPN9P43378 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PTPN9P43378 AC008741.2-201ENST00000612792 3115 ntBASIC16.68■□□□□ 0.26
PTPN9P43378 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms