Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AL451050.2-201ENST00000606967 682 ntBASIC20.75■□□□□ 0.91
COL18A1P39060 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
COL18A1P39060 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC20.75■□□□□ 0.91
COL18A1P39060 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
COL18A1P39060 AC092171.3-201ENST00000610122 2651 ntBASIC20.75■□□□□ 0.91
COL18A1P39060 DUSP13-208ENST00000478873 1335 ntTSL 5 BASIC20.75■□□□□ 0.91
COL18A1P39060 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL18A1P39060 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
COL18A1P39060 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL18A1P39060 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL18A1P39060 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
COL18A1P39060 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC20.75■□□□□ 0.91
COL18A1P39060 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL18A1P39060 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
COL18A1P39060 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
COL18A1P39060 TISP43-201ENST00000409793 538 ntTSL 4 BASIC20.74■□□□□ 0.91
COL18A1P39060 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC20.74■□□□□ 0.91
COL18A1P39060 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
COL18A1P39060 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC20.74■□□□□ 0.91
COL18A1P39060 RN7SL190P-201ENST00000582519 257 ntBASIC20.74■□□□□ 0.91
COL18A1P39060 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC20.74■□□□□ 0.91
COL18A1P39060 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
COL18A1P39060 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
COL18A1P39060 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL18A1P39060 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL18A1P39060 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC20.74■□□□□ 0.91
COL18A1P39060 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
COL18A1P39060 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
COL18A1P39060 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC20.74■□□□□ 0.91
COL18A1P39060 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
COL18A1P39060 AL138799.1-201ENST00000448213 1675 ntBASIC20.74■□□□□ 0.91
COL18A1P39060 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC20.74■□□□□ 0.91
COL18A1P39060 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
COL18A1P39060 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL18A1P39060 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC20.74■□□□□ 0.91
COL18A1P39060 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL18A1P39060 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
COL18A1P39060 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL18A1P39060 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL18A1P39060 FXNP2-201ENST00000411625 547 ntBASIC20.74■□□□□ 0.91
COL18A1P39060 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC20.74■□□□□ 0.91
COL18A1P39060 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC20.74■□□□□ 0.91
COL18A1P39060 COG4-212ENST00000564653 590 ntTSL 5 BASIC20.74■□□□□ 0.91
COL18A1P39060 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC20.74■□□□□ 0.91
COL18A1P39060 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC20.74■□□□□ 0.91
COL18A1P39060 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL18A1P39060 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL18A1P39060 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC20.74■□□□□ 0.91
COL18A1P39060 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
COL18A1P39060 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
COL18A1P39060 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC20.73■□□□□ 0.91
COL18A1P39060 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL18A1P39060 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC20.73■□□□□ 0.91
COL18A1P39060 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC20.73■□□□□ 0.91
COL18A1P39060 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL18A1P39060 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
COL18A1P39060 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
COL18A1P39060 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL18A1P39060 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC20.73■□□□□ 0.91
COL18A1P39060 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC20.73■□□□□ 0.91
COL18A1P39060 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL18A1P39060 AC005077.2-201ENST00000449786 690 ntBASIC20.73■□□□□ 0.91
COL18A1P39060 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC20.73■□□□□ 0.91
COL18A1P39060 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
COL18A1P39060 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC20.73■□□□□ 0.91
COL18A1P39060 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC20.73■□□□□ 0.91
COL18A1P39060 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC20.73■□□□□ 0.91
COL18A1P39060 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC20.73■□□□□ 0.91
COL18A1P39060 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC20.73■□□□□ 0.91
COL18A1P39060 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL18A1P39060 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
COL18A1P39060 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL18A1P39060 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL18A1P39060 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC20.73■□□□□ 0.91
COL18A1P39060 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC20.73■□□□□ 0.91
COL18A1P39060 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL18A1P39060 AL354989.2-201ENST00000435838 1540 ntBASIC20.73■□□□□ 0.91
COL18A1P39060 AC015818.8-201ENST00000587907 1519 ntBASIC20.73■□□□□ 0.91
COL18A1P39060 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC20.72■□□□□ 0.91
COL18A1P39060 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL18A1P39060 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
COL18A1P39060 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL18A1P39060 POM121L8P-201ENST00000417732 1281 ntBASIC20.72■□□□□ 0.91
COL18A1P39060 DEF8-202ENST00000418391 852 ntTSL 2 BASIC20.72■□□□□ 0.91
COL18A1P39060 EIF3FP3-201ENST00000434851 1086 ntBASIC20.72■□□□□ 0.91
COL18A1P39060 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC20.72■□□□□ 0.91
COL18A1P39060 POM121L9P-203ENST00000441984 1285 ntBASIC20.72■□□□□ 0.91
COL18A1P39060 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
COL18A1P39060 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC20.72■□□□□ 0.91
COL18A1P39060 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
COL18A1P39060 AC005730.2-201ENST00000564549 1184 ntBASIC20.72■□□□□ 0.91
COL18A1P39060 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
COL18A1P39060 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL18A1P39060 PRSS30P-206ENST00000641773 873 ntBASIC20.72■□□□□ 0.91
COL18A1P39060 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC20.72■□□□□ 0.91
COL18A1P39060 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL18A1P39060 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL18A1P39060 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL18A1P39060 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
COL18A1P39060 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms