Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
BRCA1P38398 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
BRCA1P38398 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
BRCA1P38398 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC19.1■□□□□ 0.65
BRCA1P38398 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
BRCA1P38398 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
BRCA1P38398 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
BRCA1P38398 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC19.1■□□□□ 0.65
BRCA1P38398 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
BRCA1P38398 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC19.1■□□□□ 0.65
BRCA1P38398 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC19.1■□□□□ 0.65
BRCA1P38398 SPERT-204ENST00000610924 1505 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
BRCA1P38398 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
BRCA1P38398 AL021707.5-201ENST00000420118 461 ntTSL 5 BASIC19.1■□□□□ 0.65
BRCA1P38398 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
BRCA1P38398 AC100850.1-201ENST00000506768 649 ntBASIC19.1■□□□□ 0.65
BRCA1P38398 AC011491.1-203ENST00000637688 543 ntBASIC19.1■□□□□ 0.65
BRCA1P38398 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC19.1■□□□□ 0.65
BRCA1P38398 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
BRCA1P38398 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
BRCA1P38398 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
BRCA1P38398 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC19.1■□□□□ 0.65
BRCA1P38398 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
BRCA1P38398 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
BRCA1P38398 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC19.09■□□□□ 0.65
BRCA1P38398 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
BRCA1P38398 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC19.09■□□□□ 0.65
BRCA1P38398 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
BRCA1P38398 CST9L-201ENST00000376979 959 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
BRCA1P38398 AL008707.1-201ENST00000422498 534 ntBASIC19.09■□□□□ 0.65
BRCA1P38398 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC19.09■□□□□ 0.65
BRCA1P38398 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC19.09■□□□□ 0.65
BRCA1P38398 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
BRCA1P38398 SHOX-202ENST00000381575 1351 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
BRCA1P38398 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
BRCA1P38398 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
BRCA1P38398 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
BRCA1P38398 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
BRCA1P38398 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC19.09■□□□□ 0.65
BRCA1P38398 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
BRCA1P38398 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC19.09■□□□□ 0.65
BRCA1P38398 RNF165-205ENST00000588679 2904 ntBASIC19.09■□□□□ 0.65
BRCA1P38398 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
BRCA1P38398 KDSR-201ENST00000326575 1024 ntTSL 2 BASIC19.09■□□□□ 0.65
BRCA1P38398 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
BRCA1P38398 EIF3K-202ENST00000538434 966 ntTSL 2 BASIC19.09■□□□□ 0.65
BRCA1P38398 CSH2-206ENST00000560142 749 ntTSL 5 BASIC19.09■□□□□ 0.65
BRCA1P38398 ENPP7P14-201ENST00000621765 1040 ntBASIC19.09■□□□□ 0.65
BRCA1P38398 AL353726.2-201ENST00000623259 884 ntBASIC19.09■□□□□ 0.65
BRCA1P38398 AC100757.4-201ENST00000626934 759 ntBASIC19.09■□□□□ 0.65
BRCA1P38398 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
BRCA1P38398 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
BRCA1P38398 POLL-217ENST00000628479 1953 ntTSL 5 BASIC19.09■□□□□ 0.65
BRCA1P38398 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
BRCA1P38398 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
BRCA1P38398 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
BRCA1P38398 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC19.09■□□□□ 0.65
BRCA1P38398 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC19.08■□□□□ 0.65
BRCA1P38398 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
BRCA1P38398 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC19.08■□□□□ 0.65
BRCA1P38398 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
BRCA1P38398 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
BRCA1P38398 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
BRCA1P38398 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.65
BRCA1P38398 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
BRCA1P38398 IL9-201ENST00000274520 591 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
BRCA1P38398 MYL3-202ENST00000395869 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
BRCA1P38398 RPL13AP19-201ENST00000434320 584 ntBASIC19.08■□□□□ 0.65
BRCA1P38398 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC19.08■□□□□ 0.65
BRCA1P38398 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC19.08■□□□□ 0.65
BRCA1P38398 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC19.08■□□□□ 0.65
BRCA1P38398 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.65
BRCA1P38398 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
BRCA1P38398 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.64
BRCA1P38398 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
BRCA1P38398 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
BRCA1P38398 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
BRCA1P38398 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC19.07■□□□□ 0.64
BRCA1P38398 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
BRCA1P38398 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
BRCA1P38398 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
BRCA1P38398 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
BRCA1P38398 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
BRCA1P38398 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC19.07■□□□□ 0.64
BRCA1P38398 SLC16A6P1-201ENST00000413214 1059 ntBASIC19.07■□□□□ 0.64
BRCA1P38398 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
BRCA1P38398 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC19.07■□□□□ 0.64
BRCA1P38398 CSTF3-206ENST00000524827 693 ntTSL 3 BASIC19.07■□□□□ 0.64
BRCA1P38398 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC19.07■□□□□ 0.64
BRCA1P38398 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC19.07■□□□□ 0.64
BRCA1P38398 AC103808.5-201ENST00000577797 462 ntTSL 3 BASIC19.07■□□□□ 0.64
BRCA1P38398 ZNF581-203ENST00000587252 1324 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
BRCA1P38398 SRD5A3-AS1-211ENST00000599135 737 ntTSL 5 BASIC19.07■□□□□ 0.64
BRCA1P38398 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC19.07■□□□□ 0.64
BRCA1P38398 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
BRCA1P38398 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
BRCA1P38398 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
BRCA1P38398 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
BRCA1P38398 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
BRCA1P38398 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 70.4 ms