Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
HOXC4P09017 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
HOXC4P09017 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
HOXC4P09017 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
HOXC4P09017 AC069224.1-201ENST00000566372 1715 ntBASIC15.6■□□□□ 0.09
HOXC4P09017 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC15.59■□□□□ 0.09
HOXC4P09017 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC15.59■□□□□ 0.09
HOXC4P09017 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC15.59■□□□□ 0.09
HOXC4P09017 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC15.59■□□□□ 0.09
HOXC4P09017 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
HOXC4P09017 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
HOXC4P09017 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC15.59■□□□□ 0.09
HOXC4P09017 AL607033.1-201ENST00000623900 1599 ntBASIC15.59■□□□□ 0.09
HOXC4P09017 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC15.59■□□□□ 0.09
HOXC4P09017 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
HOXC4P09017 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC15.59■□□□□ 0.09
HOXC4P09017 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC15.59■□□□□ 0.09
HOXC4P09017 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC15.59■□□□□ 0.09
HOXC4P09017 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
HOXC4P09017 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC15.59■□□□□ 0.09
HOXC4P09017 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC15.59■□□□□ 0.09
HOXC4P09017 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC15.59■□□□□ 0.09
HOXC4P09017 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
HOXC4P09017 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC15.59■□□□□ 0.09
HOXC4P09017 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC15.59■□□□□ 0.09
HOXC4P09017 RN7SL752P-201ENST00000463779 287 ntBASIC15.59■□□□□ 0.09
HOXC4P09017 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC15.59■□□□□ 0.09
HOXC4P09017 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC15.59■□□□□ 0.09
HOXC4P09017 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC15.59■□□□□ 0.09
HOXC4P09017 AC092552.1-201ENST00000547243 906 ntBASIC15.59■□□□□ 0.09
HOXC4P09017 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
HOXC4P09017 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC15.59■□□□□ 0.09
HOXC4P09017 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC15.59■□□□□ 0.09
HOXC4P09017 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC15.59■□□□□ 0.09
HOXC4P09017 CMC2-214ENST00000565925 640 ntTSL 5 BASIC15.59■□□□□ 0.09
HOXC4P09017 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC15.59■□□□□ 0.09
HOXC4P09017 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
HOXC4P09017 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC15.59■□□□□ 0.09
HOXC4P09017 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
HOXC4P09017 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC15.59■□□□□ 0.09
HOXC4P09017 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
HOXC4P09017 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
HOXC4P09017 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
HOXC4P09017 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
HOXC4P09017 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
HOXC4P09017 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
HOXC4P09017 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
HOXC4P09017 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC15.59■□□□□ 0.09
HOXC4P09017 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
HOXC4P09017 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC15.59■□□□□ 0.09
HOXC4P09017 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC15.58■□□□□ 0.09
HOXC4P09017 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC15.58■□□□□ 0.09
HOXC4P09017 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
HOXC4P09017 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC15.58■□□□□ 0.09
HOXC4P09017 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC15.58■□□□□ 0.09
HOXC4P09017 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC15.58■□□□□ 0.09
HOXC4P09017 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
HOXC4P09017 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
HOXC4P09017 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
HOXC4P09017 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC15.58■□□□□ 0.08
HOXC4P09017 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC15.58■□□□□ 0.08
HOXC4P09017 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC15.58■□□□□ 0.08
HOXC4P09017 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
HOXC4P09017 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
HOXC4P09017 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC15.58■□□□□ 0.08
HOXC4P09017 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC15.58■□□□□ 0.08
HOXC4P09017 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC15.58■□□□□ 0.08
HOXC4P09017 AC098850.1-201ENST00000419919 790 ntBASIC15.58■□□□□ 0.08
HOXC4P09017 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC15.58■□□□□ 0.08
HOXC4P09017 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
HOXC4P09017 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC15.58■□□□□ 0.08
HOXC4P09017 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC15.58■□□□□ 0.08
HOXC4P09017 KRT17P7-201ENST00000451704 1104 ntBASIC15.58■□□□□ 0.08
HOXC4P09017 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC15.58■□□□□ 0.08
HOXC4P09017 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC15.58■□□□□ 0.08
HOXC4P09017 POLE2-203ENST00000553805 496 ntTSL 2 BASIC15.58■□□□□ 0.08
HOXC4P09017 CTBP2P3-201ENST00000585629 1255 ntBASIC15.58■□□□□ 0.08
HOXC4P09017 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC15.58■□□□□ 0.08
HOXC4P09017 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
HOXC4P09017 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
HOXC4P09017 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC15.58■□□□□ 0.08
HOXC4P09017 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
HOXC4P09017 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC15.58■□□□□ 0.08
HOXC4P09017 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
HOXC4P09017 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
HOXC4P09017 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.08
HOXC4P09017 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
HOXC4P09017 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
HOXC4P09017 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
HOXC4P09017 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
HOXC4P09017 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
HOXC4P09017 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC15.58■□□□□ 0.08
HOXC4P09017 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC15.57■□□□□ 0.08
HOXC4P09017 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
HOXC4P09017 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
HOXC4P09017 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC15.57■□□□□ 0.08
HOXC4P09017 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
HOXC4P09017 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
HOXC4P09017 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC15.57■□□□□ 0.08
HOXC4P09017 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms