Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
MSH4O15457 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
MSH4O15457 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
MSH4O15457 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
MSH4O15457 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
MSH4O15457 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC18.01■□□□□ 0.47
MSH4O15457 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
MSH4O15457 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC18■□□□□ 0.47
MSH4O15457 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
MSH4O15457 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
MSH4O15457 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
MSH4O15457 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC18■□□□□ 0.47
MSH4O15457 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
MSH4O15457 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
MSH4O15457 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC18■□□□□ 0.47
MSH4O15457 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
MSH4O15457 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
MSH4O15457 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
MSH4O15457 AC114501.2-201ENST00000439631 535 ntBASIC18■□□□□ 0.47
MSH4O15457 SPDYE18-201ENST00000510091 1050 ntBASIC18■□□□□ 0.47
MSH4O15457 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
MSH4O15457 LINC02560-201ENST00000596379 459 ntBASIC18■□□□□ 0.47
MSH4O15457 AL450472.2-201ENST00000603663 1156 ntBASIC18■□□□□ 0.47
MSH4O15457 AC004790.1-201ENST00000612686 536 ntBASIC18■□□□□ 0.47
MSH4O15457 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
MSH4O15457 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
MSH4O15457 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC18■□□□□ 0.47
MSH4O15457 AC018695.7-201ENST00000624587 2492 ntBASIC18■□□□□ 0.47
MSH4O15457 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC18■□□□□ 0.47
MSH4O15457 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC18■□□□□ 0.47
MSH4O15457 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
MSH4O15457 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC18■□□□□ 0.47
MSH4O15457 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC18■□□□□ 0.47
MSH4O15457 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
MSH4O15457 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC18■□□□□ 0.47
MSH4O15457 BTBD7P1-201ENST00000447253 1453 ntBASIC18■□□□□ 0.47
MSH4O15457 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC18■□□□□ 0.47
MSH4O15457 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
MSH4O15457 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
MSH4O15457 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
MSH4O15457 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
MSH4O15457 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
MSH4O15457 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC18■□□□□ 0.47
MSH4O15457 PCDHA1-201ENST00000378133 2726 ntBASIC18■□□□□ 0.47
MSH4O15457 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC18■□□□□ 0.47
MSH4O15457 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
MSH4O15457 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
MSH4O15457 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC17.99■□□□□ 0.47
MSH4O15457 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC17.99■□□□□ 0.47
MSH4O15457 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC17.99■□□□□ 0.47
MSH4O15457 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
MSH4O15457 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC17.99■□□□□ 0.47
MSH4O15457 Z97205.2-201ENST00000564697 1639 ntBASIC17.99■□□□□ 0.47
MSH4O15457 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC17.99■□□□□ 0.47
MSH4O15457 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
MSH4O15457 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
MSH4O15457 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC17.99■□□□□ 0.47
MSH4O15457 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC17.99■□□□□ 0.47
MSH4O15457 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC17.99■□□□□ 0.47
MSH4O15457 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC17.99■□□□□ 0.47
MSH4O15457 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC17.99■□□□□ 0.47
MSH4O15457 AC135586.1-201ENST00000539323 574 ntBASIC17.99■□□□□ 0.47
MSH4O15457 HNRNPUP1-201ENST00000554987 333 ntBASIC17.99■□□□□ 0.47
MSH4O15457 AC008761.3-201ENST00000624803 892 ntBASIC17.99■□□□□ 0.47
MSH4O15457 AC004461.2-201ENST00000629517 803 ntBASIC17.99■□□□□ 0.47
MSH4O15457 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC17.99■□□□□ 0.47
MSH4O15457 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
MSH4O15457 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC17.99■□□□□ 0.47
MSH4O15457 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC17.99■□□□□ 0.47
MSH4O15457 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
MSH4O15457 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
MSH4O15457 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
MSH4O15457 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC17.99■□□□□ 0.47
MSH4O15457 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
MSH4O15457 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC17.99■□□□□ 0.47
MSH4O15457 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
MSH4O15457 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
MSH4O15457 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC17.98■□□□□ 0.47
MSH4O15457 GRN-214ENST00000589265 1632 ntTSL 5 BASIC17.98■□□□□ 0.47
MSH4O15457 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
MSH4O15457 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC17.98■□□□□ 0.47
MSH4O15457 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC17.98■□□□□ 0.47
MSH4O15457 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
MSH4O15457 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
MSH4O15457 AC074338.1-201ENST00000416825 156 ntBASIC17.98■□□□□ 0.47
MSH4O15457 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC17.98■□□□□ 0.47
MSH4O15457 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
MSH4O15457 TARDBPP1-201ENST00000442013 1203 ntBASIC17.98■□□□□ 0.47
MSH4O15457 FAM207CP-201ENST00000443486 507 ntBASIC17.98■□□□□ 0.47
MSH4O15457 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC17.98■□□□□ 0.47
MSH4O15457 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC17.98■□□□□ 0.47
MSH4O15457 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
MSH4O15457 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC17.98■□□□□ 0.47
MSH4O15457 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC17.98■□□□□ 0.47
MSH4O15457 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC17.98■□□□□ 0.47
MSH4O15457 MIR3197-201ENST00000582241 73 ntBASIC17.98■□□□□ 0.47
MSH4O15457 AC097359.3-201ENST00000603982 1210 ntBASIC17.98■□□□□ 0.47
MSH4O15457 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
MSH4O15457 VILL-207ENST00000465644 1857 ntTSL 5 BASIC17.98■□□□□ 0.47
MSH4O15457 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC17.98■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 52.4 ms