Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
COL6A5A8TX70 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
COL6A5A8TX70 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
COL6A5A8TX70 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
COL6A5A8TX70 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC12.24□□□□□ -0.45
COL6A5A8TX70 GSG1L-201ENST00000380897 1173 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
COL6A5A8TX70 POLR2H-203ENST00000430783 1159 ntTSL 2 BASIC12.24□□□□□ -0.45
COL6A5A8TX70 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC12.24□□□□□ -0.45
COL6A5A8TX70 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
COL6A5A8TX70 HKR1-225ENST00000592168 566 ntTSL 4 BASIC12.24□□□□□ -0.45
COL6A5A8TX70 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC12.24□□□□□ -0.45
COL6A5A8TX70 AC013467.2-201ENST00000605472 835 ntBASIC12.24□□□□□ -0.45
COL6A5A8TX70 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
COL6A5A8TX70 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
COL6A5A8TX70 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
COL6A5A8TX70 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.45
COL6A5A8TX70 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
COL6A5A8TX70 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
COL6A5A8TX70 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
COL6A5A8TX70 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
COL6A5A8TX70 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
COL6A5A8TX70 AL354751.1-201ENST00000412768 1863 ntBASIC12.24□□□□□ -0.45
COL6A5A8TX70 AR-207ENST00000612010 3896 ntTSL 5 BASIC12.24□□□□□ -0.45
COL6A5A8TX70 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC12.24□□□□□ -0.45
COL6A5A8TX70 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
COL6A5A8TX70 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.45
COL6A5A8TX70 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
COL6A5A8TX70 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
COL6A5A8TX70 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
COL6A5A8TX70 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
COL6A5A8TX70 KRT18P64-201ENST00000434946 1219 ntBASIC12.24□□□□□ -0.45
COL6A5A8TX70 AC096649.1-201ENST00000449168 497 ntTSL 3 BASIC12.24□□□□□ -0.45
COL6A5A8TX70 AC012158.2-201ENST00000536546 354 ntBASIC12.24□□□□□ -0.45
COL6A5A8TX70 DDX5-235ENST00000630471 473 ntTSL 4 BASIC12.24□□□□□ -0.45
COL6A5A8TX70 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC12.24□□□□□ -0.45
COL6A5A8TX70 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC12.24□□□□□ -0.45
COL6A5A8TX70 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
COL6A5A8TX70 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
COL6A5A8TX70 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
COL6A5A8TX70 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
COL6A5A8TX70 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC12.23□□□□□ -0.45
COL6A5A8TX70 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
COL6A5A8TX70 AC087289.5-201ENST00000586076 3175 ntBASIC12.23□□□□□ -0.45
COL6A5A8TX70 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC12.23□□□□□ -0.45
COL6A5A8TX70 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
COL6A5A8TX70 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
COL6A5A8TX70 AL354989.2-201ENST00000435838 1540 ntBASIC12.23□□□□□ -0.45
COL6A5A8TX70 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
COL6A5A8TX70 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC12.23□□□□□ -0.45
COL6A5A8TX70 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
COL6A5A8TX70 OR9I1-201ENST00000302610 945 ntAPPRIS P1 BASIC12.23□□□□□ -0.45
COL6A5A8TX70 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
COL6A5A8TX70 AC004540.1-204ENST00000449537 727 ntTSL 2 BASIC12.23□□□□□ -0.45
COL6A5A8TX70 IGHV3-37-201ENST00000518544 340 ntBASIC12.23□□□□□ -0.45
COL6A5A8TX70 CD59-210ENST00000528700 652 ntAPPRIS P2 TSL 2 BASIC12.23□□□□□ -0.45
COL6A5A8TX70 DNAJB13-203ENST00000537753 912 ntTSL 3 BASIC12.23□□□□□ -0.45
COL6A5A8TX70 NME1-NME2-203ENST00000555572 1193 ntAPPRIS ALT2 TSL 2 BASIC12.23□□□□□ -0.45
COL6A5A8TX70 AC242376.1-201ENST00000559033 726 ntBASIC12.23□□□□□ -0.45
COL6A5A8TX70 EID1-202ENST00000560490 584 ntTSL 3 BASIC12.23□□□□□ -0.45
COL6A5A8TX70 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC12.23□□□□□ -0.45
COL6A5A8TX70 AC242376.2-201ENST00000619355 883 ntBASIC12.23□□□□□ -0.45
COL6A5A8TX70 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
COL6A5A8TX70 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC12.23□□□□□ -0.45
COL6A5A8TX70 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
COL6A5A8TX70 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC12.23□□□□□ -0.45
COL6A5A8TX70 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC12.23□□□□□ -0.45
COL6A5A8TX70 AC009053.2-201ENST00000563701 2365 ntBASIC12.23□□□□□ -0.45
COL6A5A8TX70 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
COL6A5A8TX70 LINC02537-201ENST00000635943 1367 ntTSL 4 BASIC12.23□□□□□ -0.45
COL6A5A8TX70 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
COL6A5A8TX70 GGT4P-201ENST00000623672 1708 ntBASIC12.23□□□□□ -0.45
COL6A5A8TX70 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC12.23□□□□□ -0.45
COL6A5A8TX70 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC12.23□□□□□ -0.45
COL6A5A8TX70 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC12.23□□□□□ -0.45
COL6A5A8TX70 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
COL6A5A8TX70 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
COL6A5A8TX70 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
COL6A5A8TX70 AL354892.2-201ENST00000413088 403 ntTSL 5 BASIC12.23□□□□□ -0.45
COL6A5A8TX70 AP000842.2-201ENST00000533033 517 ntTSL 4 BASIC12.23□□□□□ -0.45
COL6A5A8TX70 SLC25A21-203ENST00000555449 1023 ntAPPRIS ALT1 TSL 2 BASIC12.23□□□□□ -0.45
COL6A5A8TX70 AC079336.4-201ENST00000584219 408 ntTSL 2 BASIC12.23□□□□□ -0.45
COL6A5A8TX70 AC018695.6-201ENST00000614011 534 ntBASIC12.23□□□□□ -0.45
COL6A5A8TX70 MME-218ENST00000625667 363 ntTSL 5 BASIC12.23□□□□□ -0.45
COL6A5A8TX70 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
COL6A5A8TX70 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
COL6A5A8TX70 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
COL6A5A8TX70 FST-202ENST00000396947 2538 ntTSL 5 BASIC12.22□□□□□ -0.45
COL6A5A8TX70 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC12.22□□□□□ -0.45
COL6A5A8TX70 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
COL6A5A8TX70 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
COL6A5A8TX70 KLK6-201ENST00000310157 1511 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
COL6A5A8TX70 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
COL6A5A8TX70 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
COL6A5A8TX70 SLC25A19-205ENST00000442286 1496 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
COL6A5A8TX70 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
COL6A5A8TX70 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
COL6A5A8TX70 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC12.22□□□□□ -0.45
COL6A5A8TX70 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
COL6A5A8TX70 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
COL6A5A8TX70 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC12.22□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms