Protein–RNA interactions for Protein: Q9P218

COL20A1, Collagen alpha-1(XX) chain, humanhuman

Predictions only

Length 1,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL20A1Q9P218 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL20A1Q9P218 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL20A1Q9P218 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
COL20A1Q9P218 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC18.09■□□□□ 0.49
COL20A1Q9P218 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL20A1Q9P218 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC18.09■□□□□ 0.49
COL20A1Q9P218 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL20A1Q9P218 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
COL20A1Q9P218 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC18.08■□□□□ 0.49
COL20A1Q9P218 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC18.08■□□□□ 0.49
COL20A1Q9P218 AL607033.1-201ENST00000623900 1599 ntBASIC18.08■□□□□ 0.49
COL20A1Q9P218 MTHFR-217ENST00000641820 1569 ntBASIC18.08■□□□□ 0.49
COL20A1Q9P218 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
COL20A1Q9P218 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
COL20A1Q9P218 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.49
COL20A1Q9P218 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
COL20A1Q9P218 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
COL20A1Q9P218 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC18.08■□□□□ 0.49
COL20A1Q9P218 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC18.08■□□□□ 0.49
COL20A1Q9P218 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC18.08■□□□□ 0.49
COL20A1Q9P218 MIR648-201ENST00000385046 94 ntBASIC18.08■□□□□ 0.48
COL20A1Q9P218 AL512384.1-201ENST00000406683 331 ntBASIC18.08■□□□□ 0.48
COL20A1Q9P218 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC18.08■□□□□ 0.48
COL20A1Q9P218 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC18.08■□□□□ 0.48
COL20A1Q9P218 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC18.08■□□□□ 0.48
COL20A1Q9P218 RN7SL837P-201ENST00000463010 287 ntBASIC18.08■□□□□ 0.48
COL20A1Q9P218 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
COL20A1Q9P218 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC18.08■□□□□ 0.48
COL20A1Q9P218 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC18.08■□□□□ 0.48
COL20A1Q9P218 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC18.08■□□□□ 0.48
COL20A1Q9P218 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC18.08■□□□□ 0.48
COL20A1Q9P218 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC18.08■□□□□ 0.48
COL20A1Q9P218 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC18.08■□□□□ 0.48
COL20A1Q9P218 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC18.08■□□□□ 0.48
COL20A1Q9P218 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL20A1Q9P218 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL20A1Q9P218 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC18.08■□□□□ 0.48
COL20A1Q9P218 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL20A1Q9P218 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL20A1Q9P218 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL20A1Q9P218 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
COL20A1Q9P218 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL20A1Q9P218 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC18.08■□□□□ 0.48
COL20A1Q9P218 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC18.08■□□□□ 0.48
COL20A1Q9P218 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL20A1Q9P218 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC18.08■□□□□ 0.48
COL20A1Q9P218 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL20A1Q9P218 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
COL20A1Q9P218 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
COL20A1Q9P218 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL20A1Q9P218 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
COL20A1Q9P218 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL20A1Q9P218 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC18.07■□□□□ 0.48
COL20A1Q9P218 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL20A1Q9P218 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL20A1Q9P218 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL20A1Q9P218 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC18.07■□□□□ 0.48
COL20A1Q9P218 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
COL20A1Q9P218 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL20A1Q9P218 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC18.07■□□□□ 0.48
COL20A1Q9P218 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
COL20A1Q9P218 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
COL20A1Q9P218 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
COL20A1Q9P218 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC18.07■□□□□ 0.48
COL20A1Q9P218 RN7SL399P-201ENST00000471648 279 ntBASIC18.07■□□□□ 0.48
COL20A1Q9P218 GIMAP3P-201ENST00000495150 836 ntBASIC18.07■□□□□ 0.48
COL20A1Q9P218 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC18.07■□□□□ 0.48
COL20A1Q9P218 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC18.07■□□□□ 0.48
COL20A1Q9P218 TMEM261P1-201ENST00000604899 340 ntBASIC18.07■□□□□ 0.48
COL20A1Q9P218 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL20A1Q9P218 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC18.07■□□□□ 0.48
COL20A1Q9P218 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL20A1Q9P218 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL20A1Q9P218 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC18.07■□□□□ 0.48
COL20A1Q9P218 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC18.07■□□□□ 0.48
COL20A1Q9P218 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
COL20A1Q9P218 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL20A1Q9P218 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL20A1Q9P218 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL20A1Q9P218 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC18.07■□□□□ 0.48
COL20A1Q9P218 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
COL20A1Q9P218 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC18.07■□□□□ 0.48
COL20A1Q9P218 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC18.06■□□□□ 0.48
COL20A1Q9P218 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
COL20A1Q9P218 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
COL20A1Q9P218 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL20A1Q9P218 GCK-209ENST00000616242 2260 ntTSL 5 BASIC18.06■□□□□ 0.48
COL20A1Q9P218 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
COL20A1Q9P218 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
COL20A1Q9P218 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL20A1Q9P218 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL20A1Q9P218 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
COL20A1Q9P218 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL20A1Q9P218 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC18.06■□□□□ 0.48
COL20A1Q9P218 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL20A1Q9P218 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC18.06■□□□□ 0.48
COL20A1Q9P218 GLI4-203ENST00000517468 963 ntTSL 5 BASIC18.06■□□□□ 0.48
COL20A1Q9P218 AC092552.1-201ENST00000547243 906 ntBASIC18.06■□□□□ 0.48
COL20A1Q9P218 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC18.06■□□□□ 0.48
COL20A1Q9P218 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC18.06■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 64.5 ms