Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 CSH2-202ENST00000345366 598 ntTSL 5 BASIC19.02■□□□□ 0.64
ZNF541Q9H0D2 AC136604.1-201ENST00000418535 575 ntBASIC19.02■□□□□ 0.64
ZNF541Q9H0D2 RN7SL769P-201ENST00000469386 295 ntBASIC19.02■□□□□ 0.64
ZNF541Q9H0D2 KRT18P43-201ENST00000469825 1281 ntBASIC19.02■□□□□ 0.64
ZNF541Q9H0D2 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
ZNF541Q9H0D2 AC106738.2-201ENST00000559802 557 ntTSL 4 BASIC19.02■□□□□ 0.64
ZNF541Q9H0D2 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC19.02■□□□□ 0.64
ZNF541Q9H0D2 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC19.02■□□□□ 0.64
ZNF541Q9H0D2 AC097724.1-201ENST00000609581 426 ntBASIC19.02■□□□□ 0.64
ZNF541Q9H0D2 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
ZNF541Q9H0D2 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
ZNF541Q9H0D2 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC19.02■□□□□ 0.64
ZNF541Q9H0D2 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC19.02■□□□□ 0.64
ZNF541Q9H0D2 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
ZNF541Q9H0D2 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC19.02■□□□□ 0.64
ZNF541Q9H0D2 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
ZNF541Q9H0D2 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
ZNF541Q9H0D2 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.63
ZNF541Q9H0D2 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
ZNF541Q9H0D2 B9D1-202ENST00000268841 755 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
ZNF541Q9H0D2 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
ZNF541Q9H0D2 DEF8-202ENST00000418391 852 ntTSL 2 BASIC19.01■□□□□ 0.63
ZNF541Q9H0D2 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC19.01■□□□□ 0.63
ZNF541Q9H0D2 AC253536.4-201ENST00000440539 267 ntBASIC19.01■□□□□ 0.63
ZNF541Q9H0D2 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
ZNF541Q9H0D2 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC19.01■□□□□ 0.63
ZNF541Q9H0D2 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC19.01■□□□□ 0.63
ZNF541Q9H0D2 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
ZNF541Q9H0D2 BHMT-206ENST00000524080 1207 ntTSL 2 BASIC19.01■□□□□ 0.63
ZNF541Q9H0D2 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
ZNF541Q9H0D2 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC19.01■□□□□ 0.63
ZNF541Q9H0D2 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC19.01■□□□□ 0.63
ZNF541Q9H0D2 MFSD11-218ENST00000591864 446 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
ZNF541Q9H0D2 C17orf50-202ENST00000604830 477 ntTSL 3 BASIC19.01■□□□□ 0.63
ZNF541Q9H0D2 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
ZNF541Q9H0D2 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC19.01■□□□□ 0.63
ZNF541Q9H0D2 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
ZNF541Q9H0D2 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC19.01■□□□□ 0.63
ZNF541Q9H0D2 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
ZNF541Q9H0D2 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC19.01■□□□□ 0.63
ZNF541Q9H0D2 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC19.01■□□□□ 0.63
ZNF541Q9H0D2 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
ZNF541Q9H0D2 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC19.01■□□□□ 0.63
ZNF541Q9H0D2 PCDHB18P-201ENST00000524813 2368 ntBASIC19.01■□□□□ 0.63
ZNF541Q9H0D2 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
ZNF541Q9H0D2 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
ZNF541Q9H0D2 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC19.01■□□□□ 0.63
ZNF541Q9H0D2 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC19.01■□□□□ 0.63
ZNF541Q9H0D2 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
ZNF541Q9H0D2 TP73-209ENST00000603362 1668 ntTSL 5 BASIC19.01■□□□□ 0.63
ZNF541Q9H0D2 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
ZNF541Q9H0D2 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
ZNF541Q9H0D2 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC19.01■□□□□ 0.63
ZNF541Q9H0D2 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
ZNF541Q9H0D2 DYDC1-201ENST00000372202 612 ntAPPRIS P1 TSL 3 BASIC19■□□□□ 0.63
ZNF541Q9H0D2 MIR33B-201ENST00000385104 96 ntBASIC19■□□□□ 0.63
ZNF541Q9H0D2 VCPKMT-201ENST00000395859 795 ntTSL 1 (best) BASIC19■□□□□ 0.63
ZNF541Q9H0D2 RAB1A-201ENST00000398529 1198 ntTSL 1 (best) BASIC19■□□□□ 0.63
ZNF541Q9H0D2 PGGT1BP2-201ENST00000398621 1028 ntBASIC19■□□□□ 0.63
ZNF541Q9H0D2 AC104457.1-201ENST00000401024 814 ntBASIC19■□□□□ 0.63
ZNF541Q9H0D2 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC19■□□□□ 0.63
ZNF541Q9H0D2 APOA2-204ENST00000464492 530 ntTSL 3 BASIC19■□□□□ 0.63
ZNF541Q9H0D2 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC19■□□□□ 0.63
ZNF541Q9H0D2 PGAP2-224ENST00000490830 810 ntTSL 3 BASIC19■□□□□ 0.63
ZNF541Q9H0D2 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
ZNF541Q9H0D2 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC19■□□□□ 0.63
ZNF541Q9H0D2 AC015910.1-201ENST00000579400 975 ntBASIC19■□□□□ 0.63
ZNF541Q9H0D2 AC090386.1-202ENST00000586610 469 ntTSL 3 BASIC19■□□□□ 0.63
ZNF541Q9H0D2 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC19■□□□□ 0.63
ZNF541Q9H0D2 AC008736.2-201ENST00000587554 516 ntTSL 2 BASIC19■□□□□ 0.63
ZNF541Q9H0D2 AC093813.1-201ENST00000605066 256 ntBASIC19■□□□□ 0.63
ZNF541Q9H0D2 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
ZNF541Q9H0D2 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
ZNF541Q9H0D2 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC19■□□□□ 0.63
ZNF541Q9H0D2 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC19■□□□□ 0.63
ZNF541Q9H0D2 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
ZNF541Q9H0D2 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC19■□□□□ 0.63
ZNF541Q9H0D2 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
ZNF541Q9H0D2 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
ZNF541Q9H0D2 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC19■□□□□ 0.63
ZNF541Q9H0D2 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC19■□□□□ 0.63
ZNF541Q9H0D2 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
ZNF541Q9H0D2 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
ZNF541Q9H0D2 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC19■□□□□ 0.63
ZNF541Q9H0D2 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC19■□□□□ 0.63
ZNF541Q9H0D2 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC19■□□□□ 0.63
ZNF541Q9H0D2 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC19■□□□□ 0.63
ZNF541Q9H0D2 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC19■□□□□ 0.63
ZNF541Q9H0D2 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
ZNF541Q9H0D2 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC19■□□□□ 0.63
ZNF541Q9H0D2 KRTAP19-9P-201ENST00000421795 191 ntBASIC19■□□□□ 0.63
ZNF541Q9H0D2 PTPA-217ENST00000434095 870 ntTSL 2 BASIC19■□□□□ 0.63
ZNF541Q9H0D2 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC19■□□□□ 0.63
ZNF541Q9H0D2 TMEM198B-204ENST00000484016 896 ntBASIC19■□□□□ 0.63
ZNF541Q9H0D2 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC19■□□□□ 0.63
ZNF541Q9H0D2 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC19■□□□□ 0.63
ZNF541Q9H0D2 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC19■□□□□ 0.63
ZNF541Q9H0D2 NDUFV2P1-201ENST00000596415 907 ntBASIC19■□□□□ 0.63
ZNF541Q9H0D2 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
ZNF541Q9H0D2 AL592424.1-201ENST00000563624 1536 ntBASIC18.99■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 79.4 ms