Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 FO393414.2-201ENST00000405153 598 ntBASIC13.83□□□□□ -0.2
COL12A1Q99715 AC097065.1-201ENST00000425737 517 ntBASIC13.83□□□□□ -0.2
COL12A1Q99715 DNAJB1P1-201ENST00000429417 1024 ntBASIC13.83□□□□□ -0.2
COL12A1Q99715 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
COL12A1Q99715 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC13.83□□□□□ -0.2
COL12A1Q99715 ZSCAN10-205ENST00000572548 618 ntTSL 3 BASIC13.83□□□□□ -0.2
COL12A1Q99715 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC13.83□□□□□ -0.2
COL12A1Q99715 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC13.83□□□□□ -0.2
COL12A1Q99715 UXT-AS1-202ENST00000591832 565 ntTSL 4 BASIC13.83□□□□□ -0.2
COL12A1Q99715 PRMT5-AS1-206ENST00000599580 847 ntTSL 5 BASIC13.83□□□□□ -0.2
COL12A1Q99715 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC13.83□□□□□ -0.2
COL12A1Q99715 GPAA1P2-202ENST00000606848 1787 ntBASIC13.83□□□□□ -0.2
COL12A1Q99715 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
COL12A1Q99715 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC13.83□□□□□ -0.2
COL12A1Q99715 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
COL12A1Q99715 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
COL12A1Q99715 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
COL12A1Q99715 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
COL12A1Q99715 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC13.83□□□□□ -0.2
COL12A1Q99715 AL139384.1-201ENST00000612143 3047 ntBASIC13.83□□□□□ -0.2
COL12A1Q99715 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC13.83□□□□□ -0.2
COL12A1Q99715 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
COL12A1Q99715 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC13.83□□□□□ -0.2
COL12A1Q99715 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
COL12A1Q99715 TEX30-203ENST00000376022 828 ntTSL 2 BASIC13.83□□□□□ -0.2
COL12A1Q99715 RPSAP31-201ENST00000416648 895 ntBASIC13.83□□□□□ -0.2
COL12A1Q99715 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC13.83□□□□□ -0.2
COL12A1Q99715 AL590640.2-201ENST00000457038 527 ntBASIC13.83□□□□□ -0.2
COL12A1Q99715 VDAC1P7-201ENST00000462417 847 ntBASIC13.83□□□□□ -0.2
COL12A1Q99715 NSD1-211ENST00000511258 809 ntTSL 3 BASIC13.83□□□□□ -0.2
COL12A1Q99715 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC13.83□□□□□ -0.2
COL12A1Q99715 AL031282.1-201ENST00000577672 409 ntTSL 3 BASIC13.83□□□□□ -0.2
COL12A1Q99715 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC13.83□□□□□ -0.2
COL12A1Q99715 AL023775.1-201ENST00000454907 1746 ntBASIC13.83□□□□□ -0.2
COL12A1Q99715 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
COL12A1Q99715 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.2
COL12A1Q99715 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC13.83□□□□□ -0.2
COL12A1Q99715 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
COL12A1Q99715 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC13.83□□□□□ -0.2
COL12A1Q99715 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
COL12A1Q99715 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
COL12A1Q99715 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC13.82□□□□□ -0.2
COL12A1Q99715 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC13.82□□□□□ -0.2
COL12A1Q99715 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
COL12A1Q99715 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC13.82□□□□□ -0.2
COL12A1Q99715 AL512430.1-201ENST00000392575 860 ntBASIC13.82□□□□□ -0.2
COL12A1Q99715 AC093433.1-201ENST00000458048 571 ntBASIC13.82□□□□□ -0.2
COL12A1Q99715 DNM1P30-201ENST00000563586 452 ntBASIC13.82□□□□□ -0.2
COL12A1Q99715 C19orf25-205ENST00000588427 853 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
COL12A1Q99715 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
COL12A1Q99715 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC13.82□□□□□ -0.2
COL12A1Q99715 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
COL12A1Q99715 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
COL12A1Q99715 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
COL12A1Q99715 PCDH8P1-201ENST00000428983 2773 ntBASIC13.82□□□□□ -0.2
COL12A1Q99715 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
COL12A1Q99715 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
COL12A1Q99715 ZDHHC4-204ENST00000396709 1485 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
COL12A1Q99715 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
COL12A1Q99715 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
COL12A1Q99715 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
COL12A1Q99715 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
COL12A1Q99715 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC13.82□□□□□ -0.2
COL12A1Q99715 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
COL12A1Q99715 FABP5P3-202ENST00000477993 1027 ntTSL 5 BASIC13.82□□□□□ -0.2
COL12A1Q99715 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC13.82□□□□□ -0.2
COL12A1Q99715 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
COL12A1Q99715 PAQR9-AS1-203ENST00000497652 516 ntTSL 3 BASIC13.82□□□□□ -0.2
COL12A1Q99715 GUSBP1-202ENST00000508260 1012 ntTSL 2 BASIC13.82□□□□□ -0.2
COL12A1Q99715 ALG1L13P-204ENST00000523017 765 ntTSL 5 BASIC13.82□□□□□ -0.2
COL12A1Q99715 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC13.82□□□□□ -0.2
COL12A1Q99715 AL118516.1-201ENST00000564152 670 ntBASIC13.82□□□□□ -0.2
COL12A1Q99715 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC13.82□□□□□ -0.2
COL12A1Q99715 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
COL12A1Q99715 ECM1P1-201ENST00000604092 1279 ntBASIC13.82□□□□□ -0.2
COL12A1Q99715 AL805961.1-201ENST00000642026 753 ntBASIC13.82□□□□□ -0.2
COL12A1Q99715 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
COL12A1Q99715 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
COL12A1Q99715 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
COL12A1Q99715 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
COL12A1Q99715 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
COL12A1Q99715 AL138709.1-201ENST00000614840 1693 ntBASIC13.82□□□□□ -0.2
COL12A1Q99715 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
COL12A1Q99715 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
COL12A1Q99715 PKIG-203ENST00000372887 769 ntTSL 3 BASIC13.82□□□□□ -0.2
COL12A1Q99715 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
COL12A1Q99715 TISP43-201ENST00000409793 538 ntTSL 4 BASIC13.82□□□□□ -0.2
COL12A1Q99715 AL020996.1-201ENST00000442055 435 ntTSL 2 BASIC13.82□□□□□ -0.2
COL12A1Q99715 EEF1DP4-201ENST00000446006 880 ntBASIC13.82□□□□□ -0.2
COL12A1Q99715 TP53AIP1-201ENST00000458238 777 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
COL12A1Q99715 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC13.82□□□□□ -0.2
COL12A1Q99715 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC13.82□□□□□ -0.2
COL12A1Q99715 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC13.82□□□□□ -0.2
COL12A1Q99715 LINC00969-257ENST00000625632 898 ntTSL 5 BASIC13.82□□□□□ -0.2
COL12A1Q99715 PRSS30P-206ENST00000641773 873 ntBASIC13.82□□□□□ -0.2
COL12A1Q99715 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
COL12A1Q99715 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
COL12A1Q99715 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
COL12A1Q99715 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
COL12A1Q99715 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms