Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
CCDC140Q96MF4 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
CCDC140Q96MF4 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
CCDC140Q96MF4 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC12.48□□□□□ -0.41
CCDC140Q96MF4 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CCDC140Q96MF4 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC12.48□□□□□ -0.41
CCDC140Q96MF4 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
CCDC140Q96MF4 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
CCDC140Q96MF4 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CCDC140Q96MF4 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
CCDC140Q96MF4 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CCDC140Q96MF4 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
CCDC140Q96MF4 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC12.48□□□□□ -0.41
CCDC140Q96MF4 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC12.48□□□□□ -0.41
CCDC140Q96MF4 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CCDC140Q96MF4 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC12.47□□□□□ -0.41
CCDC140Q96MF4 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC12.47□□□□□ -0.41
CCDC140Q96MF4 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC12.47□□□□□ -0.41
CCDC140Q96MF4 PRAL-201ENST00000624952 3286 ntBASIC12.47□□□□□ -0.41
CCDC140Q96MF4 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
CCDC140Q96MF4 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
CCDC140Q96MF4 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC12.47□□□□□ -0.41
CCDC140Q96MF4 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC12.47□□□□□ -0.41
CCDC140Q96MF4 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
CCDC140Q96MF4 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
CCDC140Q96MF4 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
CCDC140Q96MF4 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
CCDC140Q96MF4 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC12.47□□□□□ -0.41
CCDC140Q96MF4 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
CCDC140Q96MF4 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC12.47□□□□□ -0.41
CCDC140Q96MF4 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
CCDC140Q96MF4 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC12.47□□□□□ -0.41
CCDC140Q96MF4 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC12.47□□□□□ -0.41
CCDC140Q96MF4 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
CCDC140Q96MF4 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC12.47□□□□□ -0.41
CCDC140Q96MF4 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC12.47□□□□□ -0.41
CCDC140Q96MF4 AL353705.2-201ENST00000428243 662 ntBASIC12.47□□□□□ -0.41
CCDC140Q96MF4 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC12.47□□□□□ -0.41
CCDC140Q96MF4 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
CCDC140Q96MF4 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC12.47□□□□□ -0.41
CCDC140Q96MF4 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC12.47□□□□□ -0.41
CCDC140Q96MF4 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC12.47□□□□□ -0.41
CCDC140Q96MF4 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC12.47□□□□□ -0.41
CCDC140Q96MF4 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
CCDC140Q96MF4 NAA38-207ENST00000576861 556 ntTSL 3 BASIC12.47□□□□□ -0.41
CCDC140Q96MF4 AC018529.1-201ENST00000613063 361 ntBASIC12.47□□□□□ -0.41
CCDC140Q96MF4 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC12.47□□□□□ -0.41
CCDC140Q96MF4 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC12.47□□□□□ -0.41
CCDC140Q96MF4 RAB34-224ENST00000636513 888 ntTSL 5 BASIC12.47□□□□□ -0.41
CCDC140Q96MF4 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
CCDC140Q96MF4 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
CCDC140Q96MF4 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
CCDC140Q96MF4 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
CCDC140Q96MF4 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
CCDC140Q96MF4 ABR-203ENST00000536794 2213 ntTSL 2 BASIC12.47□□□□□ -0.41
CCDC140Q96MF4 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
CCDC140Q96MF4 AP003680.1-201ENST00000598970 3660 ntBASIC12.47□□□□□ -0.41
CCDC140Q96MF4 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC12.47□□□□□ -0.41
CCDC140Q96MF4 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
CCDC140Q96MF4 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC12.47□□□□□ -0.41
CCDC140Q96MF4 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
CCDC140Q96MF4 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
CCDC140Q96MF4 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
CCDC140Q96MF4 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
CCDC140Q96MF4 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
CCDC140Q96MF4 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
CCDC140Q96MF4 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
CCDC140Q96MF4 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
CCDC140Q96MF4 BNIP3P1-202ENST00000550043 1585 ntBASIC12.47□□□□□ -0.41
CCDC140Q96MF4 CYP4F24P-201ENST00000586049 1580 ntBASIC12.47□□□□□ -0.41
CCDC140Q96MF4 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
CCDC140Q96MF4 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
CCDC140Q96MF4 ZBTB45P2-201ENST00000452245 1531 ntBASIC12.47□□□□□ -0.41
CCDC140Q96MF4 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
CCDC140Q96MF4 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
CCDC140Q96MF4 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
CCDC140Q96MF4 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC12.46□□□□□ -0.41
CCDC140Q96MF4 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
CCDC140Q96MF4 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC12.46□□□□□ -0.41
CCDC140Q96MF4 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
CCDC140Q96MF4 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC12.46□□□□□ -0.41
CCDC140Q96MF4 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
CCDC140Q96MF4 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC12.46□□□□□ -0.41
CCDC140Q96MF4 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
CCDC140Q96MF4 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC12.46□□□□□ -0.41
CCDC140Q96MF4 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
CCDC140Q96MF4 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
CCDC140Q96MF4 ZBP1-201ENST00000371173 2195 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.41
CCDC140Q96MF4 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
CCDC140Q96MF4 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC12.46□□□□□ -0.41
CCDC140Q96MF4 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
CCDC140Q96MF4 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.41
CCDC140Q96MF4 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC12.46□□□□□ -0.41
CCDC140Q96MF4 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC12.46□□□□□ -0.41
CCDC140Q96MF4 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
CCDC140Q96MF4 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC12.46□□□□□ -0.41
CCDC140Q96MF4 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC12.46□□□□□ -0.41
CCDC140Q96MF4 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
CCDC140Q96MF4 RPL30-202ENST00000396070 440 ntTSL 2 BASIC12.46□□□□□ -0.41
CCDC140Q96MF4 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms