Protein–RNA interactions for Protein: Q8N8U3

RTL3, Retrotransposon Gag-like protein 3, humanhuman

Known RBP Predictions only

Length 475 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTL3Q8N8U3 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
RTL3Q8N8U3 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
RTL3Q8N8U3 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
RTL3Q8N8U3 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC16.51■□□□□ 0.23
RTL3Q8N8U3 AC010491.1-201ENST00000563101 2797 ntBASIC16.51■□□□□ 0.23
RTL3Q8N8U3 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
RTL3Q8N8U3 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
RTL3Q8N8U3 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
RTL3Q8N8U3 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
RTL3Q8N8U3 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC16.51■□□□□ 0.23
RTL3Q8N8U3 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
RTL3Q8N8U3 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
RTL3Q8N8U3 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
RTL3Q8N8U3 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
RTL3Q8N8U3 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
RTL3Q8N8U3 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
RTL3Q8N8U3 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
RTL3Q8N8U3 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
RTL3Q8N8U3 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
RTL3Q8N8U3 PNMT-202ENST00000394246 821 ntTSL 2 BASIC16.51■□□□□ 0.23
RTL3Q8N8U3 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
RTL3Q8N8U3 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC16.51■□□□□ 0.23
RTL3Q8N8U3 SPDYE17-201ENST00000412399 783 ntBASIC16.51■□□□□ 0.23
RTL3Q8N8U3 EEF1DP4-201ENST00000446006 880 ntBASIC16.51■□□□□ 0.23
RTL3Q8N8U3 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
RTL3Q8N8U3 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
RTL3Q8N8U3 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC16.51■□□□□ 0.23
RTL3Q8N8U3 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC16.51■□□□□ 0.23
RTL3Q8N8U3 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC16.51■□□□□ 0.23
RTL3Q8N8U3 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC16.51■□□□□ 0.23
RTL3Q8N8U3 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
RTL3Q8N8U3 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
RTL3Q8N8U3 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
RTL3Q8N8U3 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC16.51■□□□□ 0.23
RTL3Q8N8U3 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC16.51■□□□□ 0.23
RTL3Q8N8U3 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
RTL3Q8N8U3 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
RTL3Q8N8U3 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC16.51■□□□□ 0.23
RTL3Q8N8U3 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
RTL3Q8N8U3 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
RTL3Q8N8U3 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC16.5■□□□□ 0.23
RTL3Q8N8U3 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC16.5■□□□□ 0.23
RTL3Q8N8U3 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
RTL3Q8N8U3 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
RTL3Q8N8U3 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
RTL3Q8N8U3 CETN4P-206ENST00000642099 2168 ntBASIC16.5■□□□□ 0.23
RTL3Q8N8U3 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
RTL3Q8N8U3 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC16.5■□□□□ 0.23
RTL3Q8N8U3 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
RTL3Q8N8U3 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
RTL3Q8N8U3 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
RTL3Q8N8U3 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC16.5■□□□□ 0.23
RTL3Q8N8U3 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC16.5■□□□□ 0.23
RTL3Q8N8U3 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
RTL3Q8N8U3 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC16.5■□□□□ 0.23
RTL3Q8N8U3 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
RTL3Q8N8U3 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
RTL3Q8N8U3 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC16.5■□□□□ 0.23
RTL3Q8N8U3 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
RTL3Q8N8U3 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
RTL3Q8N8U3 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
RTL3Q8N8U3 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC16.5■□□□□ 0.23
RTL3Q8N8U3 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC16.5■□□□□ 0.23
RTL3Q8N8U3 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
RTL3Q8N8U3 AL079307.3-201ENST00000556114 283 ntBASIC16.5■□□□□ 0.23
RTL3Q8N8U3 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC16.5■□□□□ 0.23
RTL3Q8N8U3 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC16.5■□□□□ 0.23
RTL3Q8N8U3 AL589739.1-201ENST00000607720 493 ntBASIC16.5■□□□□ 0.23
RTL3Q8N8U3 SPDYE12P-201ENST00000618416 771 ntBASIC16.5■□□□□ 0.23
RTL3Q8N8U3 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
RTL3Q8N8U3 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
RTL3Q8N8U3 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
RTL3Q8N8U3 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
RTL3Q8N8U3 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
RTL3Q8N8U3 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC16.5■□□□□ 0.23
RTL3Q8N8U3 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC16.5■□□□□ 0.23
RTL3Q8N8U3 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
RTL3Q8N8U3 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
RTL3Q8N8U3 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
RTL3Q8N8U3 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
RTL3Q8N8U3 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
RTL3Q8N8U3 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
RTL3Q8N8U3 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
RTL3Q8N8U3 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC16.5■□□□□ 0.23
RTL3Q8N8U3 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
RTL3Q8N8U3 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC16.49■□□□□ 0.23
RTL3Q8N8U3 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
RTL3Q8N8U3 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
RTL3Q8N8U3 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
RTL3Q8N8U3 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
RTL3Q8N8U3 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
RTL3Q8N8U3 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
RTL3Q8N8U3 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC16.49■□□□□ 0.23
RTL3Q8N8U3 TNRC18P3-201ENST00000441896 2691 ntBASIC16.49■□□□□ 0.23
RTL3Q8N8U3 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
RTL3Q8N8U3 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
RTL3Q8N8U3 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
RTL3Q8N8U3 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
RTL3Q8N8U3 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
RTL3Q8N8U3 HLA-DRB6-201ENST00000411500 1235 ntBASIC16.49■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 53.5 ms