Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
SYNE4Q8N205 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
SYNE4Q8N205 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC19.88■□□□□ 0.77
SYNE4Q8N205 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC19.88■□□□□ 0.77
SYNE4Q8N205 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC19.88■□□□□ 0.77
SYNE4Q8N205 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC19.88■□□□□ 0.77
SYNE4Q8N205 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC19.88■□□□□ 0.77
SYNE4Q8N205 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
SYNE4Q8N205 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SYNE4Q8N205 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC19.88■□□□□ 0.77
SYNE4Q8N205 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
SYNE4Q8N205 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
SYNE4Q8N205 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SYNE4Q8N205 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SYNE4Q8N205 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SYNE4Q8N205 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC19.87■□□□□ 0.77
SYNE4Q8N205 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC19.87■□□□□ 0.77
SYNE4Q8N205 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SYNE4Q8N205 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SYNE4Q8N205 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
SYNE4Q8N205 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
SYNE4Q8N205 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC19.87■□□□□ 0.77
SYNE4Q8N205 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC19.87■□□□□ 0.77
SYNE4Q8N205 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC19.87■□□□□ 0.77
SYNE4Q8N205 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
SYNE4Q8N205 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
SYNE4Q8N205 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SYNE4Q8N205 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SYNE4Q8N205 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SYNE4Q8N205 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SYNE4Q8N205 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
SYNE4Q8N205 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
SYNE4Q8N205 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC19.87■□□□□ 0.77
SYNE4Q8N205 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC19.87■□□□□ 0.77
SYNE4Q8N205 PHKG1P2-201ENST00000457537 863 ntBASIC19.87■□□□□ 0.77
SYNE4Q8N205 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC19.87■□□□□ 0.77
SYNE4Q8N205 FAM86LP-201ENST00000478302 853 ntBASIC19.87■□□□□ 0.77
SYNE4Q8N205 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC19.87■□□□□ 0.77
SYNE4Q8N205 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC19.87■□□□□ 0.77
SYNE4Q8N205 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC19.87■□□□□ 0.77
SYNE4Q8N205 AL583810.1-201ENST00000553344 1045 ntBASIC19.87■□□□□ 0.77
SYNE4Q8N205 HNRNPUP1-201ENST00000554987 333 ntBASIC19.87■□□□□ 0.77
SYNE4Q8N205 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC19.87■□□□□ 0.77
SYNE4Q8N205 MIR6787-201ENST00000616675 61 ntBASIC19.87■□□□□ 0.77
SYNE4Q8N205 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SYNE4Q8N205 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC19.87■□□□□ 0.77
SYNE4Q8N205 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
SYNE4Q8N205 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC19.87■□□□□ 0.77
SYNE4Q8N205 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
SYNE4Q8N205 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SYNE4Q8N205 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SYNE4Q8N205 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC19.87■□□□□ 0.77
SYNE4Q8N205 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC19.86■□□□□ 0.77
SYNE4Q8N205 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC19.86■□□□□ 0.77
SYNE4Q8N205 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
SYNE4Q8N205 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SYNE4Q8N205 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
SYNE4Q8N205 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
SYNE4Q8N205 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
SYNE4Q8N205 MIR1908-201ENST00000410394 80 ntBASIC19.86■□□□□ 0.77
SYNE4Q8N205 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
SYNE4Q8N205 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC19.86■□□□□ 0.77
SYNE4Q8N205 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
SYNE4Q8N205 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC19.86■□□□□ 0.77
SYNE4Q8N205 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
SYNE4Q8N205 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC19.86■□□□□ 0.77
SYNE4Q8N205 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC19.86■□□□□ 0.77
SYNE4Q8N205 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC19.86■□□□□ 0.77
SYNE4Q8N205 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC19.86■□□□□ 0.77
SYNE4Q8N205 BRI3BPP1-201ENST00000594224 787 ntBASIC19.86■□□□□ 0.77
SYNE4Q8N205 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC19.86■□□□□ 0.77
SYNE4Q8N205 AC097359.3-201ENST00000603982 1210 ntBASIC19.86■□□□□ 0.77
SYNE4Q8N205 RPS24-214ENST00000613865 538 ntTSL 5 BASIC19.86■□□□□ 0.77
SYNE4Q8N205 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
SYNE4Q8N205 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
SYNE4Q8N205 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC19.86■□□□□ 0.77
SYNE4Q8N205 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC19.86■□□□□ 0.77
SYNE4Q8N205 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SYNE4Q8N205 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
SYNE4Q8N205 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC19.86■□□□□ 0.77
SYNE4Q8N205 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
SYNE4Q8N205 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
SYNE4Q8N205 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SYNE4Q8N205 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SYNE4Q8N205 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SYNE4Q8N205 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SYNE4Q8N205 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC19.85■□□□□ 0.77
SYNE4Q8N205 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SYNE4Q8N205 AC093525.8-201ENST00000624099 1342 ntBASIC19.85■□□□□ 0.77
SYNE4Q8N205 NKILA-202ENST00000614771 2598 ntBASIC19.85■□□□□ 0.77
SYNE4Q8N205 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SYNE4Q8N205 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC19.85■□□□□ 0.77
SYNE4Q8N205 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
SYNE4Q8N205 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SYNE4Q8N205 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC19.85■□□□□ 0.77
SYNE4Q8N205 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC19.85■□□□□ 0.77
SYNE4Q8N205 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
SYNE4Q8N205 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SYNE4Q8N205 NME6-203ENST00000415644 849 ntTSL 2 BASIC19.85■□□□□ 0.77
SYNE4Q8N205 TOMM22P5-201ENST00000416399 439 ntBASIC19.85■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 66.7 ms