Protein–RNA interactions for Protein: Q5VTR2

RNF20, E3 ubiquitin-protein ligase BRE1A, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF20Q5VTR2 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
RNF20Q5VTR2 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
RNF20Q5VTR2 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC19.28■□□□□ 0.68
RNF20Q5VTR2 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC19.27■□□□□ 0.68
RNF20Q5VTR2 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
RNF20Q5VTR2 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC19.27■□□□□ 0.68
RNF20Q5VTR2 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RNF20Q5VTR2 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC19.27■□□□□ 0.68
RNF20Q5VTR2 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC19.27■□□□□ 0.68
RNF20Q5VTR2 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RNF20Q5VTR2 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RNF20Q5VTR2 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC19.27■□□□□ 0.68
RNF20Q5VTR2 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC19.27■□□□□ 0.68
RNF20Q5VTR2 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RNF20Q5VTR2 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RNF20Q5VTR2 UXT-AS1-201ENST00000590504 1525 ntBASIC19.27■□□□□ 0.68
RNF20Q5VTR2 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RNF20Q5VTR2 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC19.27■□□□□ 0.68
RNF20Q5VTR2 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RNF20Q5VTR2 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC19.27■□□□□ 0.68
RNF20Q5VTR2 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
RNF20Q5VTR2 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC19.27■□□□□ 0.68
RNF20Q5VTR2 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
RNF20Q5VTR2 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RNF20Q5VTR2 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC19.27■□□□□ 0.68
RNF20Q5VTR2 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC19.27■□□□□ 0.68
RNF20Q5VTR2 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
RNF20Q5VTR2 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC19.27■□□□□ 0.68
RNF20Q5VTR2 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RNF20Q5VTR2 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC19.27■□□□□ 0.68
RNF20Q5VTR2 PUS1-205ENST00000535067 838 ntTSL 3 BASIC19.27■□□□□ 0.68
RNF20Q5VTR2 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC19.27■□□□□ 0.68
RNF20Q5VTR2 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC19.27■□□□□ 0.68
RNF20Q5VTR2 MIR3687-2-201ENST00000577708 61 ntBASIC19.27■□□□□ 0.68
RNF20Q5VTR2 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RNF20Q5VTR2 MIR3687-1-201ENST00000614492 61 ntBASIC19.27■□□□□ 0.68
RNF20Q5VTR2 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
RNF20Q5VTR2 AC084121.4-201ENST00000641598 221 ntBASIC19.27■□□□□ 0.68
RNF20Q5VTR2 AF228730.8-201ENST00000642140 221 ntBASIC19.27■□□□□ 0.68
RNF20Q5VTR2 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
RNF20Q5VTR2 AC105917.1-201ENST00000506637 2539 ntBASIC19.27■□□□□ 0.68
RNF20Q5VTR2 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
RNF20Q5VTR2 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
RNF20Q5VTR2 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
RNF20Q5VTR2 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.67
RNF20Q5VTR2 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
RNF20Q5VTR2 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC19.26■□□□□ 0.67
RNF20Q5VTR2 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RNF20Q5VTR2 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
RNF20Q5VTR2 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RNF20Q5VTR2 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
RNF20Q5VTR2 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
RNF20Q5VTR2 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RNF20Q5VTR2 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
RNF20Q5VTR2 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
RNF20Q5VTR2 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC19.26■□□□□ 0.67
RNF20Q5VTR2 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
RNF20Q5VTR2 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
RNF20Q5VTR2 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RNF20Q5VTR2 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC19.26■□□□□ 0.67
RNF20Q5VTR2 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC19.26■□□□□ 0.67
RNF20Q5VTR2 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RNF20Q5VTR2 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RNF20Q5VTR2 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
RNF20Q5VTR2 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC19.26■□□□□ 0.67
RNF20Q5VTR2 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC19.26■□□□□ 0.67
RNF20Q5VTR2 AC243562.2-201ENST00000561247 970 ntBASIC19.26■□□□□ 0.67
RNF20Q5VTR2 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC19.26■□□□□ 0.67
RNF20Q5VTR2 AC105339.1-204ENST00000636249 355 ntBASIC19.26■□□□□ 0.67
RNF20Q5VTR2 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
RNF20Q5VTR2 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RNF20Q5VTR2 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RNF20Q5VTR2 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RNF20Q5VTR2 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
RNF20Q5VTR2 AC103702.1-201ENST00000548801 2630 ntBASIC19.26■□□□□ 0.67
RNF20Q5VTR2 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
RNF20Q5VTR2 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
RNF20Q5VTR2 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
RNF20Q5VTR2 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
RNF20Q5VTR2 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC19.26■□□□□ 0.67
RNF20Q5VTR2 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RNF20Q5VTR2 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
RNF20Q5VTR2 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RNF20Q5VTR2 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC19.25■□□□□ 0.67
RNF20Q5VTR2 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC19.25■□□□□ 0.67
RNF20Q5VTR2 ING5-213ENST00000636051 4199 ntTSL 5 BASIC19.25■□□□□ 0.67
RNF20Q5VTR2 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC19.25■□□□□ 0.67
RNF20Q5VTR2 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC19.25■□□□□ 0.67
RNF20Q5VTR2 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC19.25■□□□□ 0.67
RNF20Q5VTR2 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
RNF20Q5VTR2 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC19.25■□□□□ 0.67
RNF20Q5VTR2 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
RNF20Q5VTR2 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RNF20Q5VTR2 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
RNF20Q5VTR2 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RNF20Q5VTR2 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
RNF20Q5VTR2 AC132872.4-202ENST00000622924 2756 ntBASIC19.25■□□□□ 0.67
RNF20Q5VTR2 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
RNF20Q5VTR2 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC19.25■□□□□ 0.67
RNF20Q5VTR2 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC19.25■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms