Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 NAT9-224ENST00000583757 583 ntTSL 3 BASIC19.41■□□□□ 0.7
CCDC88AQ3V6T2 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC19.41■□□□□ 0.7
CCDC88AQ3V6T2 AC091271.1-201ENST00000611877 1162 ntBASIC19.41■□□□□ 0.7
CCDC88AQ3V6T2 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
CCDC88AQ3V6T2 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC88AQ3V6T2 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC88AQ3V6T2 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC88AQ3V6T2 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC88AQ3V6T2 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC88AQ3V6T2 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC88AQ3V6T2 AC138028.6-201ENST00000616106 1482 ntBASIC19.4■□□□□ 0.7
CCDC88AQ3V6T2 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC88AQ3V6T2 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC19.4■□□□□ 0.7
CCDC88AQ3V6T2 DUSP13-208ENST00000478873 1335 ntTSL 5 BASIC19.4■□□□□ 0.7
CCDC88AQ3V6T2 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
CCDC88AQ3V6T2 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC19.4■□□□□ 0.7
CCDC88AQ3V6T2 ARTN-209ENST00000479128 471 ntTSL 3 BASIC19.4■□□□□ 0.7
CCDC88AQ3V6T2 TMEM198B-204ENST00000484016 896 ntBASIC19.4■□□□□ 0.7
CCDC88AQ3V6T2 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC19.4■□□□□ 0.7
CCDC88AQ3V6T2 HIST2H2BC-201ENST00000498492 580 ntBASIC19.4■□□□□ 0.7
CCDC88AQ3V6T2 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC88AQ3V6T2 AC005052.1-201ENST00000625181 2492 ntBASIC19.4■□□□□ 0.7
CCDC88AQ3V6T2 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC19.4■□□□□ 0.7
CCDC88AQ3V6T2 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC88AQ3V6T2 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC88AQ3V6T2 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC88AQ3V6T2 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC88AQ3V6T2 AGGF1P2-201ENST00000426656 2106 ntBASIC19.4■□□□□ 0.7
CCDC88AQ3V6T2 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC19.4■□□□□ 0.7
CCDC88AQ3V6T2 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC88AQ3V6T2 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC19.39■□□□□ 0.7
CCDC88AQ3V6T2 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
CCDC88AQ3V6T2 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
CCDC88AQ3V6T2 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
CCDC88AQ3V6T2 CAMKMT-203ENST00000403853 1114 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
CCDC88AQ3V6T2 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC19.39■□□□□ 0.7
CCDC88AQ3V6T2 AC106786.1-201ENST00000442777 792 ntTSL 3 BASIC19.39■□□□□ 0.7
CCDC88AQ3V6T2 AKR7A2P1-201ENST00000460134 915 ntBASIC19.39■□□□□ 0.7
CCDC88AQ3V6T2 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC19.39■□□□□ 0.7
CCDC88AQ3V6T2 SDHD-202ENST00000525291 790 ntTSL 3 BASIC19.39■□□□□ 0.7
CCDC88AQ3V6T2 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC19.39■□□□□ 0.7
CCDC88AQ3V6T2 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC19.39■□□□□ 0.7
CCDC88AQ3V6T2 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.7
CCDC88AQ3V6T2 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC19.39■□□□□ 0.7
CCDC88AQ3V6T2 LINC00969-254ENST00000625358 962 ntTSL 5 BASIC19.39■□□□□ 0.7
CCDC88AQ3V6T2 AC106886.4-201ENST00000623557 2502 ntBASIC19.39■□□□□ 0.7
CCDC88AQ3V6T2 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
CCDC88AQ3V6T2 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.7
CCDC88AQ3V6T2 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC88AQ3V6T2 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC19.39■□□□□ 0.69
CCDC88AQ3V6T2 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
CCDC88AQ3V6T2 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC88AQ3V6T2 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
CCDC88AQ3V6T2 AC092171.3-201ENST00000610122 2651 ntBASIC19.39■□□□□ 0.69
CCDC88AQ3V6T2 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC88AQ3V6T2 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC88AQ3V6T2 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC19.39■□□□□ 0.69
CCDC88AQ3V6T2 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC88AQ3V6T2 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
CCDC88AQ3V6T2 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC88AQ3V6T2 ALOX12P2-203ENST00000570921 1945 ntBASIC19.39■□□□□ 0.69
CCDC88AQ3V6T2 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
CCDC88AQ3V6T2 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC19.39■□□□□ 0.69
CCDC88AQ3V6T2 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC88AQ3V6T2 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
CCDC88AQ3V6T2 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
CCDC88AQ3V6T2 C1QBPP1-201ENST00000400117 770 ntBASIC19.39■□□□□ 0.69
CCDC88AQ3V6T2 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC19.39■□□□□ 0.69
CCDC88AQ3V6T2 AC253536.4-201ENST00000440539 267 ntBASIC19.39■□□□□ 0.69
CCDC88AQ3V6T2 TP53AIP1-205ENST00000531399 806 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC88AQ3V6T2 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC19.39■□□□□ 0.69
CCDC88AQ3V6T2 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
CCDC88AQ3V6T2 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC19.39■□□□□ 0.69
CCDC88AQ3V6T2 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC19.39■□□□□ 0.69
CCDC88AQ3V6T2 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC88AQ3V6T2 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC88AQ3V6T2 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC88AQ3V6T2 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC19.39■□□□□ 0.69
CCDC88AQ3V6T2 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC19.39■□□□□ 0.69
CCDC88AQ3V6T2 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
CCDC88AQ3V6T2 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
CCDC88AQ3V6T2 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC88AQ3V6T2 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC19.38■□□□□ 0.69
CCDC88AQ3V6T2 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC88AQ3V6T2 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC88AQ3V6T2 MTHFR-217ENST00000641820 1569 ntBASIC19.38■□□□□ 0.69
CCDC88AQ3V6T2 USE1-206ENST00000595101 1776 ntTSL 2 BASIC19.38■□□□□ 0.69
CCDC88AQ3V6T2 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC19.38■□□□□ 0.69
CCDC88AQ3V6T2 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC88AQ3V6T2 RPL13P2-201ENST00000440687 659 ntBASIC19.38■□□□□ 0.69
CCDC88AQ3V6T2 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC19.38■□□□□ 0.69
CCDC88AQ3V6T2 AC005077.2-201ENST00000449786 690 ntBASIC19.38■□□□□ 0.69
CCDC88AQ3V6T2 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC19.38■□□□□ 0.69
CCDC88AQ3V6T2 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC19.38■□□□□ 0.69
CCDC88AQ3V6T2 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC19.38■□□□□ 0.69
CCDC88AQ3V6T2 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
CCDC88AQ3V6T2 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC19.38■□□□□ 0.69
CCDC88AQ3V6T2 ENPP7P5-201ENST00000541031 1031 ntBASIC19.38■□□□□ 0.69
CCDC88AQ3V6T2 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC19.38■□□□□ 0.69
CCDC88AQ3V6T2 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms