Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
FOXA3P55318 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
FOXA3P55318 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
FOXA3P55318 SIGLEC16-201ENST00000599858 1437 ntBASIC12.19□□□□□ -0.46
FOXA3P55318 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
FOXA3P55318 AC087481.3-201ENST00000602886 1894 ntBASIC12.19□□□□□ -0.46
FOXA3P55318 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
FOXA3P55318 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC12.18□□□□□ -0.46
FOXA3P55318 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
FOXA3P55318 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
FOXA3P55318 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC12.18□□□□□ -0.46
FOXA3P55318 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
FOXA3P55318 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
FOXA3P55318 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC12.18□□□□□ -0.46
FOXA3P55318 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC12.18□□□□□ -0.46
FOXA3P55318 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
FOXA3P55318 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
FOXA3P55318 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC12.18□□□□□ -0.46
FOXA3P55318 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
FOXA3P55318 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
FOXA3P55318 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC12.18□□□□□ -0.46
FOXA3P55318 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC12.18□□□□□ -0.46
FOXA3P55318 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
FOXA3P55318 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC12.18□□□□□ -0.46
FOXA3P55318 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
FOXA3P55318 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC12.18□□□□□ -0.46
FOXA3P55318 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC12.18□□□□□ -0.46
FOXA3P55318 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
FOXA3P55318 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC12.18□□□□□ -0.46
FOXA3P55318 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
FOXA3P55318 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
FOXA3P55318 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC12.18□□□□□ -0.46
FOXA3P55318 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
FOXA3P55318 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC12.18□□□□□ -0.46
FOXA3P55318 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
FOXA3P55318 WDR53-204ENST00000433160 887 ntTSL 5 BASIC12.18□□□□□ -0.46
FOXA3P55318 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
FOXA3P55318 ASAP1-202ENST00000518721 5507 ntAPPRIS P3 TSL 5 BASIC12.18□□□□□ -0.46
FOXA3P55318 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
FOXA3P55318 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC12.18□□□□□ -0.46
FOXA3P55318 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC12.18□□□□□ -0.46
FOXA3P55318 COX5A-202ENST00000562233 441 ntTSL 3 BASIC12.18□□□□□ -0.46
FOXA3P55318 COX5A-204ENST00000567270 579 ntTSL 3 BASIC12.18□□□□□ -0.46
FOXA3P55318 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC12.18□□□□□ -0.46
FOXA3P55318 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC12.18□□□□□ -0.46
FOXA3P55318 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC12.18□□□□□ -0.46
FOXA3P55318 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC12.18□□□□□ -0.46
FOXA3P55318 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
FOXA3P55318 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC12.18□□□□□ -0.46
FOXA3P55318 ANK1-202ENST00000289734 8297 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
FOXA3P55318 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
FOXA3P55318 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
FOXA3P55318 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
FOXA3P55318 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
FOXA3P55318 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC12.18□□□□□ -0.46
FOXA3P55318 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC12.18□□□□□ -0.46
FOXA3P55318 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC12.18□□□□□ -0.46
FOXA3P55318 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
FOXA3P55318 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC12.18□□□□□ -0.46
FOXA3P55318 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
FOXA3P55318 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
FOXA3P55318 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC12.18□□□□□ -0.46
FOXA3P55318 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC12.18□□□□□ -0.46
FOXA3P55318 DNAJC14-203ENST00000357606 3416 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
FOXA3P55318 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC12.18□□□□□ -0.46
FOXA3P55318 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
FOXA3P55318 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
FOXA3P55318 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
FOXA3P55318 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
FOXA3P55318 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC12.17□□□□□ -0.46
FOXA3P55318 INF2-203ENST00000392634 4672 ntAPPRIS P3 TSL 5 BASIC12.17□□□□□ -0.46
FOXA3P55318 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
FOXA3P55318 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
FOXA3P55318 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
FOXA3P55318 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC12.17□□□□□ -0.46
FOXA3P55318 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC12.17□□□□□ -0.46
FOXA3P55318 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC12.17□□□□□ -0.46
FOXA3P55318 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
FOXA3P55318 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC12.17□□□□□ -0.46
FOXA3P55318 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC12.17□□□□□ -0.46
FOXA3P55318 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
FOXA3P55318 AC015656.1-201ENST00000624209 3578 ntBASIC12.17□□□□□ -0.46
FOXA3P55318 SLC27A3-201ENST00000271857 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
FOXA3P55318 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC12.17□□□□□ -0.46
FOXA3P55318 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC12.17□□□□□ -0.46
FOXA3P55318 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC12.17□□□□□ -0.46
FOXA3P55318 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC12.17□□□□□ -0.46
FOXA3P55318 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
FOXA3P55318 AC244021.1-201ENST00000417218 3662 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
FOXA3P55318 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
FOXA3P55318 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC12.17□□□□□ -0.46
FOXA3P55318 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
FOXA3P55318 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
FOXA3P55318 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC12.17□□□□□ -0.46
FOXA3P55318 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
FOXA3P55318 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
FOXA3P55318 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
FOXA3P55318 SPDYE21P-201ENST00000413323 827 ntBASIC12.17□□□□□ -0.46
FOXA3P55318 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
FOXA3P55318 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC12.17□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms