Protein–RNA interactions for Protein: P55290

CDH13, Cadherin-13, humanhuman

Predictions only

Length 713 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH13P55290 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC15.82■□□□□ 0.12
CDH13P55290 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
CDH13P55290 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CDH13P55290 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
CDH13P55290 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC15.82■□□□□ 0.12
CDH13P55290 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CDH13P55290 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CDH13P55290 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC15.82■□□□□ 0.12
CDH13P55290 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CDH13P55290 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
CDH13P55290 AC007967.2-201ENST00000432613 625 ntBASIC15.82■□□□□ 0.12
CDH13P55290 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC15.82■□□□□ 0.12
CDH13P55290 MAL2-202ENST00000531508 892 ntTSL 3 BASIC15.82■□□□□ 0.12
CDH13P55290 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC15.82■□□□□ 0.12
CDH13P55290 QPRT-203ENST00000562473 579 ntTSL 3 BASIC15.82■□□□□ 0.12
CDH13P55290 AC034105.1-201ENST00000563488 319 ntBASIC15.82■□□□□ 0.12
CDH13P55290 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC15.82■□□□□ 0.12
CDH13P55290 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC15.82■□□□□ 0.12
CDH13P55290 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC15.82■□□□□ 0.12
CDH13P55290 AC064836.3-201ENST00000607928 673 ntBASIC15.82■□□□□ 0.12
CDH13P55290 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC15.82■□□□□ 0.12
CDH13P55290 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CDH13P55290 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CDH13P55290 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CDH13P55290 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
CDH13P55290 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CDH13P55290 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC15.82■□□□□ 0.12
CDH13P55290 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC15.82■□□□□ 0.12
CDH13P55290 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CDH13P55290 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC15.82■□□□□ 0.12
CDH13P55290 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
CDH13P55290 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CDH13P55290 AMT-233ENST00000636522 1620 ntTSL 2 BASIC15.82■□□□□ 0.12
CDH13P55290 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC15.82■□□□□ 0.12
CDH13P55290 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CDH13P55290 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CDH13P55290 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
CDH13P55290 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CDH13P55290 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CDH13P55290 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
CDH13P55290 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC15.82■□□□□ 0.12
CDH13P55290 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CDH13P55290 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CDH13P55290 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CDH13P55290 AC136621.1-201ENST00000624017 2304 ntBASIC15.82■□□□□ 0.12
CDH13P55290 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
CDH13P55290 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
CDH13P55290 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
CDH13P55290 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CDH13P55290 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CDH13P55290 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CDH13P55290 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
CDH13P55290 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CDH13P55290 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CDH13P55290 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC15.81■□□□□ 0.12
CDH13P55290 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CDH13P55290 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC15.81■□□□□ 0.12
CDH13P55290 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC15.81■□□□□ 0.12
CDH13P55290 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC15.81■□□□□ 0.12
CDH13P55290 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
CDH13P55290 CRCP-205ENST00000431089 942 ntTSL 2 BASIC15.81■□□□□ 0.12
CDH13P55290 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC15.81■□□□□ 0.12
CDH13P55290 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC15.81■□□□□ 0.12
CDH13P55290 ANKRD26P3-201ENST00000454044 2748 ntBASIC15.81■□□□□ 0.12
CDH13P55290 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CDH13P55290 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CDH13P55290 PENK-208ENST00000523051 772 ntTSL 5 BASIC15.81■□□□□ 0.12
CDH13P55290 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CDH13P55290 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
CDH13P55290 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC15.81■□□□□ 0.12
CDH13P55290 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC15.81■□□□□ 0.12
CDH13P55290 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC15.81■□□□□ 0.12
CDH13P55290 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
CDH13P55290 KRT19P2-202ENST00000557173 1012 ntBASIC15.81■□□□□ 0.12
CDH13P55290 AC023824.1-201ENST00000562945 2975 ntBASIC15.81■□□□□ 0.12
CDH13P55290 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC15.81■□□□□ 0.12
CDH13P55290 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
CDH13P55290 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CDH13P55290 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC15.81■□□□□ 0.12
CDH13P55290 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC15.81■□□□□ 0.12
CDH13P55290 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
CDH13P55290 AL589702.1-201ENST00000641229 1509 ntBASIC15.81■□□□□ 0.12
CDH13P55290 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC15.81■□□□□ 0.12
CDH13P55290 PKD1P5-201ENST00000532415 10291 ntBASIC15.81■□□□□ 0.12
CDH13P55290 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC15.81■□□□□ 0.12
CDH13P55290 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
CDH13P55290 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CDH13P55290 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CDH13P55290 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CDH13P55290 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CDH13P55290 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CDH13P55290 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
CDH13P55290 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CDH13P55290 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
CDH13P55290 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CDH13P55290 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CDH13P55290 DKFZP434H168-201ENST00000567381 1905 ntBASIC15.8■□□□□ 0.12
CDH13P55290 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC15.8■□□□□ 0.12
CDH13P55290 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CDH13P55290 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms