Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
LHX1P48742 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC17.02■□□□□ 0.31
LHX1P48742 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC17.02■□□□□ 0.31
LHX1P48742 TDG-209ENST00000544861 1387 ntTSL 2 BASIC17.02■□□□□ 0.31
LHX1P48742 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC17.01■□□□□ 0.31
LHX1P48742 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LHX1P48742 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
LHX1P48742 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC17.01■□□□□ 0.31
LHX1P48742 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC17.01■□□□□ 0.31
LHX1P48742 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC17.01■□□□□ 0.31
LHX1P48742 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
LHX1P48742 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC17.01■□□□□ 0.31
LHX1P48742 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LHX1P48742 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LHX1P48742 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LHX1P48742 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LHX1P48742 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
LHX1P48742 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC17.01■□□□□ 0.31
LHX1P48742 AZGP1P1-201ENST00000411909 902 ntBASIC17.01■□□□□ 0.31
LHX1P48742 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC17.01■□□□□ 0.31
LHX1P48742 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC17.01■□□□□ 0.31
LHX1P48742 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC17.01■□□□□ 0.31
LHX1P48742 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC17.01■□□□□ 0.31
LHX1P48742 AC074044.1-201ENST00000609673 707 ntBASIC17.01■□□□□ 0.31
LHX1P48742 RNA5-8SN1-201ENST00000610460 153 ntBASIC17.01■□□□□ 0.31
LHX1P48742 RNA5-8SN5-202ENST00000612463 153 ntBASIC17.01■□□□□ 0.31
LHX1P48742 RNA5-8SN4-201ENST00000613359 153 ntBASIC17.01■□□□□ 0.31
LHX1P48742 RNA5-8SN5-201ENST00000619471 153 ntBASIC17.01■□□□□ 0.31
LHX1P48742 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LHX1P48742 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LHX1P48742 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC17.01■□□□□ 0.31
LHX1P48742 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
LHX1P48742 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
LHX1P48742 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC17.01■□□□□ 0.31
LHX1P48742 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LHX1P48742 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
LHX1P48742 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC17.01■□□□□ 0.31
LHX1P48742 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC17.01■□□□□ 0.31
LHX1P48742 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC17.01■□□□□ 0.31
LHX1P48742 REXO1L1P-202ENST00000608646 1974 ntBASIC17■□□□□ 0.31
LHX1P48742 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC17■□□□□ 0.31
LHX1P48742 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
LHX1P48742 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC17■□□□□ 0.31
LHX1P48742 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
LHX1P48742 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
LHX1P48742 CYP2T1P-202ENST00000641596 2535 ntBASIC17■□□□□ 0.31
LHX1P48742 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
LHX1P48742 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC17■□□□□ 0.31
LHX1P48742 GOLGA6L11P-201ENST00000417252 1298 ntBASIC17■□□□□ 0.31
LHX1P48742 PHKG1P2-201ENST00000457537 863 ntBASIC17■□□□□ 0.31
LHX1P48742 LHX6-205ENST00000464484 666 ntTSL 2 BASIC17■□□□□ 0.31
LHX1P48742 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC17■□□□□ 0.31
LHX1P48742 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC17■□□□□ 0.31
LHX1P48742 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC17■□□□□ 0.31
LHX1P48742 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC17■□□□□ 0.31
LHX1P48742 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
LHX1P48742 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC17■□□□□ 0.31
LHX1P48742 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
LHX1P48742 AC004233.3-201ENST00000607794 1269 ntBASIC17■□□□□ 0.31
LHX1P48742 AC004461.2-201ENST00000629517 803 ntBASIC17■□□□□ 0.31
LHX1P48742 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
LHX1P48742 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC17■□□□□ 0.31
LHX1P48742 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
LHX1P48742 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC17■□□□□ 0.31
LHX1P48742 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
LHX1P48742 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
LHX1P48742 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC17■□□□□ 0.31
LHX1P48742 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
LHX1P48742 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC17■□□□□ 0.31
LHX1P48742 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC17■□□□□ 0.31
LHX1P48742 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
LHX1P48742 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
LHX1P48742 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC17■□□□□ 0.31
LHX1P48742 AC011477.6-201ENST00000604980 1927 ntBASIC17■□□□□ 0.31
LHX1P48742 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC17■□□□□ 0.31
LHX1P48742 AC084018.2-201ENST00000613093 2607 ntBASIC17■□□□□ 0.31
LHX1P48742 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
LHX1P48742 Z97205.2-201ENST00000564697 1639 ntBASIC16.99■□□□□ 0.31
LHX1P48742 AL118508.1-201ENST00000613502 2345 ntBASIC16.99■□□□□ 0.31
LHX1P48742 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
LHX1P48742 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC16.99■□□□□ 0.31
LHX1P48742 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC16.99■□□□□ 0.31
LHX1P48742 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
LHX1P48742 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC16.99■□□□□ 0.31
LHX1P48742 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC16.99■□□□□ 0.31
LHX1P48742 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
LHX1P48742 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
LHX1P48742 PIN1P1-201ENST00000412108 996 ntBASIC16.99■□□□□ 0.31
LHX1P48742 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC16.99■□□□□ 0.31
LHX1P48742 RASL12-203ENST00000434605 982 ntTSL 2 BASIC16.99■□□□□ 0.31
LHX1P48742 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC16.99■□□□□ 0.31
LHX1P48742 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC16.99■□□□□ 0.31
LHX1P48742 TMPRSS11CP-201ENST00000453277 683 ntBASIC16.99■□□□□ 0.31
LHX1P48742 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC16.99■□□□□ 0.31
LHX1P48742 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
LHX1P48742 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC16.99■□□□□ 0.31
LHX1P48742 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
LHX1P48742 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC16.99■□□□□ 0.31
LHX1P48742 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC16.99■□□□□ 0.31
LHX1P48742 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 59.6 ms