Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
HOXA9P31269 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC16.66■□□□□ 0.26
HOXA9P31269 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC16.66■□□□□ 0.26
HOXA9P31269 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC16.66■□□□□ 0.26
HOXA9P31269 AC092658.1-201ENST00000505836 891 ntBASIC16.66■□□□□ 0.26
HOXA9P31269 SLED1-202ENST00000512051 380 ntBASIC16.66■□□□□ 0.26
HOXA9P31269 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
HOXA9P31269 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HOXA9P31269 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC16.66■□□□□ 0.26
HOXA9P31269 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
HOXA9P31269 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
HOXA9P31269 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
HOXA9P31269 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC16.66■□□□□ 0.26
HOXA9P31269 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
HOXA9P31269 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
HOXA9P31269 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HOXA9P31269 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC16.65■□□□□ 0.26
HOXA9P31269 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
HOXA9P31269 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC16.65■□□□□ 0.26
HOXA9P31269 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HOXA9P31269 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HOXA9P31269 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HOXA9P31269 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HOXA9P31269 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HOXA9P31269 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
HOXA9P31269 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HOXA9P31269 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HOXA9P31269 ANKRD19P-201ENST00000338192 862 ntBASIC16.65■□□□□ 0.26
HOXA9P31269 LBX2-201ENST00000341396 886 ntTSL 3 BASIC16.65■□□□□ 0.26
HOXA9P31269 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC16.65■□□□□ 0.26
HOXA9P31269 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
HOXA9P31269 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HOXA9P31269 MPV17-208ENST00000405076 603 ntTSL 5 BASIC16.65■□□□□ 0.26
HOXA9P31269 AC136604.1-201ENST00000418535 575 ntBASIC16.65■□□□□ 0.26
HOXA9P31269 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HOXA9P31269 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC16.65■□□□□ 0.26
HOXA9P31269 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC16.65■□□□□ 0.26
HOXA9P31269 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC16.65■□□□□ 0.26
HOXA9P31269 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC16.65■□□□□ 0.26
HOXA9P31269 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC16.65■□□□□ 0.26
HOXA9P31269 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC16.65■□□□□ 0.26
HOXA9P31269 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC16.65■□□□□ 0.26
HOXA9P31269 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC16.65■□□□□ 0.26
HOXA9P31269 AL022328.1-201ENST00000610050 478 ntBASIC16.65■□□□□ 0.26
HOXA9P31269 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HOXA9P31269 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HOXA9P31269 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
HOXA9P31269 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HOXA9P31269 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
HOXA9P31269 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HOXA9P31269 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC16.65■□□□□ 0.26
HOXA9P31269 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HOXA9P31269 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
HOXA9P31269 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC16.65■□□□□ 0.26
HOXA9P31269 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HOXA9P31269 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HOXA9P31269 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HOXA9P31269 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
HOXA9P31269 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HOXA9P31269 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
HOXA9P31269 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
HOXA9P31269 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
HOXA9P31269 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HOXA9P31269 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC16.64■□□□□ 0.26
HOXA9P31269 RERG-209ENST00000546331 1383 ntTSL 2 BASIC16.64■□□□□ 0.26
HOXA9P31269 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
HOXA9P31269 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC16.64■□□□□ 0.25
HOXA9P31269 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC16.64■□□□□ 0.25
HOXA9P31269 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC16.64■□□□□ 0.25
HOXA9P31269 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HOXA9P31269 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
HOXA9P31269 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HOXA9P31269 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
HOXA9P31269 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC16.64■□□□□ 0.25
HOXA9P31269 INTS4P2-202ENST00000614726 2019 ntBASIC16.64■□□□□ 0.25
HOXA9P31269 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HOXA9P31269 RPF1-202ENST00000370656 724 ntTSL 2 BASIC16.64■□□□□ 0.25
HOXA9P31269 AC005229.1-201ENST00000392885 409 ntBASIC16.64■□□□□ 0.25
HOXA9P31269 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC16.64■□□□□ 0.25
HOXA9P31269 AC134915.1-201ENST00000426461 574 ntBASIC16.64■□□□□ 0.25
HOXA9P31269 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC16.64■□□□□ 0.25
HOXA9P31269 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC16.64■□□□□ 0.25
HOXA9P31269 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HOXA9P31269 PHKG1P2-201ENST00000457537 863 ntBASIC16.64■□□□□ 0.25
HOXA9P31269 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC16.64■□□□□ 0.25
HOXA9P31269 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HOXA9P31269 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC16.64■□□□□ 0.25
HOXA9P31269 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC16.64■□□□□ 0.25
HOXA9P31269 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC16.64■□□□□ 0.25
HOXA9P31269 AL359711.2-201ENST00000563105 872 ntBASIC16.64■□□□□ 0.25
HOXA9P31269 AC124283.3-201ENST00000570869 594 ntBASIC16.64■□□□□ 0.25
HOXA9P31269 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC16.64■□□□□ 0.25
HOXA9P31269 REXO1L8P-201ENST00000604378 1897 ntBASIC16.64■□□□□ 0.25
HOXA9P31269 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HOXA9P31269 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC16.64■□□□□ 0.25
HOXA9P31269 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC16.64■□□□□ 0.25
HOXA9P31269 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HOXA9P31269 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
HOXA9P31269 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HOXA9P31269 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 49.1 ms