Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SMARCA1P28370 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
SMARCA1P28370 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC18.41■□□□□ 0.54
SMARCA1P28370 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
SMARCA1P28370 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SMARCA1P28370 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SMARCA1P28370 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SMARCA1P28370 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
SMARCA1P28370 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
SMARCA1P28370 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SMARCA1P28370 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
SMARCA1P28370 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SMARCA1P28370 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
SMARCA1P28370 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SMARCA1P28370 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC18.4■□□□□ 0.54
SMARCA1P28370 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
SMARCA1P28370 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC18.4■□□□□ 0.54
SMARCA1P28370 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC18.4■□□□□ 0.54
SMARCA1P28370 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SMARCA1P28370 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SMARCA1P28370 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
SMARCA1P28370 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC18.4■□□□□ 0.54
SMARCA1P28370 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC18.4■□□□□ 0.54
SMARCA1P28370 AC009118.2-201ENST00000613275 655 ntBASIC18.4■□□□□ 0.54
SMARCA1P28370 AL109936.8-201ENST00000641772 604 ntBASIC18.4■□□□□ 0.54
SMARCA1P28370 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SMARCA1P28370 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
SMARCA1P28370 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SMARCA1P28370 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC18.4■□□□□ 0.54
SMARCA1P28370 FLII-221ENST00000578558 2377 ntTSL 5 BASIC18.4■□□□□ 0.54
SMARCA1P28370 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SMARCA1P28370 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
SMARCA1P28370 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SMARCA1P28370 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC18.4■□□□□ 0.54
SMARCA1P28370 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
SMARCA1P28370 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SMARCA1P28370 DOC2GP-204ENST00000639052 2548 ntBASIC18.4■□□□□ 0.54
SMARCA1P28370 VILL-207ENST00000465644 1857 ntTSL 5 BASIC18.39■□□□□ 0.54
SMARCA1P28370 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
SMARCA1P28370 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
SMARCA1P28370 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
SMARCA1P28370 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SMARCA1P28370 GRN-214ENST00000589265 1632 ntTSL 5 BASIC18.39■□□□□ 0.53
SMARCA1P28370 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC18.39■□□□□ 0.53
SMARCA1P28370 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC18.39■□□□□ 0.53
SMARCA1P28370 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
SMARCA1P28370 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
SMARCA1P28370 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC18.39■□□□□ 0.53
SMARCA1P28370 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
SMARCA1P28370 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SMARCA1P28370 AC074338.1-201ENST00000416825 156 ntBASIC18.39■□□□□ 0.53
SMARCA1P28370 RAD18-204ENST00000418463 563 ntTSL 4 BASIC18.39■□□□□ 0.53
SMARCA1P28370 RAD18-205ENST00000421052 582 ntTSL 3 BASIC18.39■□□□□ 0.53
SMARCA1P28370 RPL13P2-201ENST00000440687 659 ntBASIC18.39■□□□□ 0.53
SMARCA1P28370 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC18.39■□□□□ 0.53
SMARCA1P28370 NME4-207ENST00000450036 985 ntTSL 3 BASIC18.39■□□□□ 0.53
SMARCA1P28370 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC18.39■□□□□ 0.53
SMARCA1P28370 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC18.39■□□□□ 0.53
SMARCA1P28370 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC18.39■□□□□ 0.53
SMARCA1P28370 RAB35-202ENST00000534951 939 ntTSL 2 BASIC18.39■□□□□ 0.53
SMARCA1P28370 MIR4313-201ENST00000580760 101 ntBASIC18.39■□□□□ 0.53
SMARCA1P28370 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SMARCA1P28370 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SMARCA1P28370 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC18.39■□□□□ 0.53
SMARCA1P28370 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC18.39■□□□□ 0.53
SMARCA1P28370 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SMARCA1P28370 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC18.39■□□□□ 0.53
SMARCA1P28370 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SMARCA1P28370 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SMARCA1P28370 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
SMARCA1P28370 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SMARCA1P28370 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
SMARCA1P28370 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC18.38■□□□□ 0.53
SMARCA1P28370 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC18.38■□□□□ 0.53
SMARCA1P28370 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
SMARCA1P28370 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SMARCA1P28370 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC18.38■□□□□ 0.53
SMARCA1P28370 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
SMARCA1P28370 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SMARCA1P28370 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SMARCA1P28370 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
SMARCA1P28370 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SMARCA1P28370 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC18.38■□□□□ 0.53
SMARCA1P28370 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SMARCA1P28370 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC18.38■□□□□ 0.53
SMARCA1P28370 FAM8A3P-201ENST00000427218 844 ntBASIC18.38■□□□□ 0.53
SMARCA1P28370 RASL12-203ENST00000434605 982 ntTSL 2 BASIC18.38■□□□□ 0.53
SMARCA1P28370 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC18.38■□□□□ 0.53
SMARCA1P28370 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SMARCA1P28370 AC135586.1-201ENST00000539323 574 ntBASIC18.38■□□□□ 0.53
SMARCA1P28370 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC18.38■□□□□ 0.53
SMARCA1P28370 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC18.38■□□□□ 0.53
SMARCA1P28370 AC092364.2-202ENST00000597012 1073 ntBASIC18.38■□□□□ 0.53
SMARCA1P28370 AC004461.2-201ENST00000629517 803 ntBASIC18.38■□□□□ 0.53
SMARCA1P28370 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SMARCA1P28370 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC18.38■□□□□ 0.53
SMARCA1P28370 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC18.38■□□□□ 0.53
SMARCA1P28370 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SMARCA1P28370 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC18.38■□□□□ 0.53
SMARCA1P28370 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC18.38■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms