Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
NPHP1O15259 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
NPHP1O15259 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
NPHP1O15259 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
NPHP1O15259 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
NPHP1O15259 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC20.29■□□□□ 0.84
NPHP1O15259 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC20.29■□□□□ 0.84
NPHP1O15259 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
NPHP1O15259 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
NPHP1O15259 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC20.29■□□□□ 0.84
NPHP1O15259 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
NPHP1O15259 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC20.29■□□□□ 0.84
NPHP1O15259 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
NPHP1O15259 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
NPHP1O15259 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
NPHP1O15259 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC20.29■□□□□ 0.84
NPHP1O15259 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
NPHP1O15259 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
NPHP1O15259 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC20.29■□□□□ 0.84
NPHP1O15259 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
NPHP1O15259 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC20.29■□□□□ 0.84
NPHP1O15259 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
NPHP1O15259 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC20.29■□□□□ 0.84
NPHP1O15259 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
NPHP1O15259 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
NPHP1O15259 AC124067.4-201ENST00000519691 2379 ntBASIC20.29■□□□□ 0.84
NPHP1O15259 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
NPHP1O15259 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
NPHP1O15259 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
NPHP1O15259 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
NPHP1O15259 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC20.28■□□□□ 0.84
NPHP1O15259 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
NPHP1O15259 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
NPHP1O15259 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
NPHP1O15259 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
NPHP1O15259 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC20.28■□□□□ 0.84
NPHP1O15259 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
NPHP1O15259 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC20.28■□□□□ 0.84
NPHP1O15259 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC20.28■□□□□ 0.84
NPHP1O15259 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
NPHP1O15259 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
NPHP1O15259 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
NPHP1O15259 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC20.28■□□□□ 0.84
NPHP1O15259 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC20.28■□□□□ 0.84
NPHP1O15259 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC20.28■□□□□ 0.84
NPHP1O15259 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC20.28■□□□□ 0.84
NPHP1O15259 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC20.28■□□□□ 0.84
NPHP1O15259 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC20.28■□□□□ 0.84
NPHP1O15259 AC092552.1-201ENST00000547243 906 ntBASIC20.28■□□□□ 0.84
NPHP1O15259 RRP7BP-205ENST00000566851 833 ntBASIC20.28■□□□□ 0.84
NPHP1O15259 ORC6-206ENST00000568364 888 ntTSL 5 BASIC20.28■□□□□ 0.84
NPHP1O15259 PAM16-215ENST00000577031 548 ntTSL 4 BASIC20.28■□□□□ 0.84
NPHP1O15259 MIR8072-201ENST00000614241 80 ntBASIC20.28■□□□□ 0.84
NPHP1O15259 COX11-210ENST00000639671 696 ntBASIC20.28■□□□□ 0.84
NPHP1O15259 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
NPHP1O15259 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC20.28■□□□□ 0.84
NPHP1O15259 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC20.28■□□□□ 0.84
NPHP1O15259 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC20.28■□□□□ 0.84
NPHP1O15259 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC20.28■□□□□ 0.84
NPHP1O15259 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC20.28■□□□□ 0.84
NPHP1O15259 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC20.28■□□□□ 0.84
NPHP1O15259 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC20.28■□□□□ 0.84
NPHP1O15259 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
NPHP1O15259 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
NPHP1O15259 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
NPHP1O15259 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC20.28■□□□□ 0.84
NPHP1O15259 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC20.27■□□□□ 0.84
NPHP1O15259 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC20.27■□□□□ 0.84
NPHP1O15259 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
NPHP1O15259 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
NPHP1O15259 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
NPHP1O15259 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
NPHP1O15259 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC20.27■□□□□ 0.84
NPHP1O15259 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
NPHP1O15259 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
NPHP1O15259 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC20.27■□□□□ 0.84
NPHP1O15259 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
NPHP1O15259 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
NPHP1O15259 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
NPHP1O15259 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC20.27■□□□□ 0.84
NPHP1O15259 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
NPHP1O15259 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC20.27■□□□□ 0.84
NPHP1O15259 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC20.27■□□□□ 0.84
NPHP1O15259 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC20.27■□□□□ 0.84
NPHP1O15259 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC20.27■□□□□ 0.84
NPHP1O15259 KRT43P-201ENST00000434019 910 ntBASIC20.27■□□□□ 0.84
NPHP1O15259 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
NPHP1O15259 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
NPHP1O15259 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
NPHP1O15259 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC20.27■□□□□ 0.84
NPHP1O15259 AC015936.2-201ENST00000593177 259 ntBASIC20.27■□□□□ 0.84
NPHP1O15259 AC008735.3-201ENST00000596646 500 ntBASIC20.27■□□□□ 0.84
NPHP1O15259 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
NPHP1O15259 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
NPHP1O15259 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
NPHP1O15259 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC20.27■□□□□ 0.84
NPHP1O15259 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
NPHP1O15259 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
NPHP1O15259 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
NPHP1O15259 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 89.4 ms