Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
FOXN3O00409 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC17.27■□□□□ 0.36
FOXN3O00409 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC17.27■□□□□ 0.36
FOXN3O00409 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
FOXN3O00409 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
FOXN3O00409 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC17.27■□□□□ 0.35
FOXN3O00409 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC17.27■□□□□ 0.35
FOXN3O00409 BNIP3P1-202ENST00000550043 1585 ntBASIC17.27■□□□□ 0.35
FOXN3O00409 AP3S2-216ENST00000617003 1561 ntBASIC17.27■□□□□ 0.35
FOXN3O00409 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC17.27■□□□□ 0.35
FOXN3O00409 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.35
FOXN3O00409 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC17.27■□□□□ 0.35
FOXN3O00409 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.35
FOXN3O00409 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
FOXN3O00409 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
FOXN3O00409 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC17.26■□□□□ 0.35
FOXN3O00409 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC17.26■□□□□ 0.35
FOXN3O00409 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
FOXN3O00409 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
FOXN3O00409 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
FOXN3O00409 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC17.26■□□□□ 0.35
FOXN3O00409 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
FOXN3O00409 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
FOXN3O00409 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
FOXN3O00409 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC17.26■□□□□ 0.35
FOXN3O00409 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
FOXN3O00409 COX10-202ENST00000429152 875 ntTSL 2 BASIC17.26■□□□□ 0.35
FOXN3O00409 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
FOXN3O00409 YBX1P5-201ENST00000509441 847 ntBASIC17.26■□□□□ 0.35
FOXN3O00409 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC17.26■□□□□ 0.35
FOXN3O00409 EHF-205ENST00000527935 557 ntTSL 2 BASIC17.26■□□□□ 0.35
FOXN3O00409 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC17.26■□□□□ 0.35
FOXN3O00409 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC17.26■□□□□ 0.35
FOXN3O00409 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC17.26■□□□□ 0.35
FOXN3O00409 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC17.26■□□□□ 0.35
FOXN3O00409 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC17.26■□□□□ 0.35
FOXN3O00409 AC022145.2-201ENST00000598203 171 ntBASIC17.26■□□□□ 0.35
FOXN3O00409 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC17.26■□□□□ 0.35
FOXN3O00409 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
FOXN3O00409 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
FOXN3O00409 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
FOXN3O00409 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
FOXN3O00409 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
FOXN3O00409 AL136982.4-201ENST00000437689 1740 ntBASIC17.26■□□□□ 0.35
FOXN3O00409 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
FOXN3O00409 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
FOXN3O00409 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
FOXN3O00409 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
FOXN3O00409 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
FOXN3O00409 CICP13-201ENST00000422015 2789 ntBASIC17.26■□□□□ 0.35
FOXN3O00409 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
FOXN3O00409 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
FOXN3O00409 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
FOXN3O00409 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
FOXN3O00409 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
FOXN3O00409 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC17.26■□□□□ 0.35
FOXN3O00409 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
FOXN3O00409 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
FOXN3O00409 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
FOXN3O00409 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC17.25■□□□□ 0.35
FOXN3O00409 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC17.25■□□□□ 0.35
FOXN3O00409 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
FOXN3O00409 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC17.25■□□□□ 0.35
FOXN3O00409 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
FOXN3O00409 AC018892.3-201ENST00000623986 2499 ntBASIC17.25■□□□□ 0.35
FOXN3O00409 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
FOXN3O00409 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
FOXN3O00409 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
FOXN3O00409 SLC9A7P1-201ENST00000554295 3311 ntBASIC17.25■□□□□ 0.35
FOXN3O00409 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
FOXN3O00409 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
FOXN3O00409 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
FOXN3O00409 AC092384.3-202ENST00000564646 2873 ntBASIC17.25■□□□□ 0.35
FOXN3O00409 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
FOXN3O00409 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
FOXN3O00409 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
FOXN3O00409 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
FOXN3O00409 CASK-202ENST00000378158 3848 ntTSL 5 BASIC17.25■□□□□ 0.35
FOXN3O00409 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC17.25■□□□□ 0.35
FOXN3O00409 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC17.25■□□□□ 0.35
FOXN3O00409 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC17.25■□□□□ 0.35
FOXN3O00409 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC17.25■□□□□ 0.35
FOXN3O00409 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
FOXN3O00409 DNAJB3-201ENST00000446806 729 ntBASIC17.25■□□□□ 0.35
FOXN3O00409 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC17.25■□□□□ 0.35
FOXN3O00409 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
FOXN3O00409 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC17.25■□□□□ 0.35
FOXN3O00409 MIR4469-201ENST00000583919 79 ntBASIC17.25■□□□□ 0.35
FOXN3O00409 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC17.25■□□□□ 0.35
FOXN3O00409 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
FOXN3O00409 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC17.25■□□□□ 0.35
FOXN3O00409 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
FOXN3O00409 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC17.25■□□□□ 0.35
FOXN3O00409 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
FOXN3O00409 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
FOXN3O00409 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC17.25■□□□□ 0.35
FOXN3O00409 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
FOXN3O00409 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
FOXN3O00409 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
FOXN3O00409 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms