Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIMD1Q9UGP4 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIMD1Q9UGP4 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIMD1Q9UGP4 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
LIMD1Q9UGP4 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC16.82■□□□□ 0.28
LIMD1Q9UGP4 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
LIMD1Q9UGP4 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC16.82■□□□□ 0.28
LIMD1Q9UGP4 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
LIMD1Q9UGP4 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
LIMD1Q9UGP4 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC16.82■□□□□ 0.28
LIMD1Q9UGP4 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIMD1Q9UGP4 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIMD1Q9UGP4 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
LIMD1Q9UGP4 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC16.82■□□□□ 0.28
LIMD1Q9UGP4 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIMD1Q9UGP4 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC16.81■□□□□ 0.28
LIMD1Q9UGP4 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC16.81■□□□□ 0.28
LIMD1Q9UGP4 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
LIMD1Q9UGP4 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
LIMD1Q9UGP4 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LIMD1Q9UGP4 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LIMD1Q9UGP4 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
LIMD1Q9UGP4 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
LIMD1Q9UGP4 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
LIMD1Q9UGP4 KRT8P44-201ENST00000441609 1350 ntBASIC16.81■□□□□ 0.28
LIMD1Q9UGP4 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
LIMD1Q9UGP4 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC16.81■□□□□ 0.28
LIMD1Q9UGP4 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
LIMD1Q9UGP4 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC16.81■□□□□ 0.28
LIMD1Q9UGP4 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC16.81■□□□□ 0.28
LIMD1Q9UGP4 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LIMD1Q9UGP4 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
LIMD1Q9UGP4 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
LIMD1Q9UGP4 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
LIMD1Q9UGP4 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LIMD1Q9UGP4 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC16.81■□□□□ 0.28
LIMD1Q9UGP4 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC16.81■□□□□ 0.28
LIMD1Q9UGP4 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC16.81■□□□□ 0.28
LIMD1Q9UGP4 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
LIMD1Q9UGP4 KRT43P-201ENST00000434019 910 ntBASIC16.81■□□□□ 0.28
LIMD1Q9UGP4 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
LIMD1Q9UGP4 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
LIMD1Q9UGP4 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC16.81■□□□□ 0.28
LIMD1Q9UGP4 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
LIMD1Q9UGP4 AL583810.1-201ENST00000553344 1045 ntBASIC16.81■□□□□ 0.28
LIMD1Q9UGP4 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC16.81■□□□□ 0.28
LIMD1Q9UGP4 RRP7BP-205ENST00000566851 833 ntBASIC16.81■□□□□ 0.28
LIMD1Q9UGP4 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC16.81■□□□□ 0.28
LIMD1Q9UGP4 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC16.81■□□□□ 0.28
LIMD1Q9UGP4 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC16.81■□□□□ 0.28
LIMD1Q9UGP4 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LIMD1Q9UGP4 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC16.81■□□□□ 0.28
LIMD1Q9UGP4 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
LIMD1Q9UGP4 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC16.81■□□□□ 0.28
LIMD1Q9UGP4 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
LIMD1Q9UGP4 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LIMD1Q9UGP4 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LIMD1Q9UGP4 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC16.81■□□□□ 0.28
LIMD1Q9UGP4 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
LIMD1Q9UGP4 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
LIMD1Q9UGP4 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LIMD1Q9UGP4 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LIMD1Q9UGP4 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LIMD1Q9UGP4 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LIMD1Q9UGP4 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC16.8■□□□□ 0.28
LIMD1Q9UGP4 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LIMD1Q9UGP4 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LIMD1Q9UGP4 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
LIMD1Q9UGP4 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC16.8■□□□□ 0.28
LIMD1Q9UGP4 SNX33P1-201ENST00000592116 1762 ntBASIC16.8■□□□□ 0.28
LIMD1Q9UGP4 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC16.8■□□□□ 0.28
LIMD1Q9UGP4 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LIMD1Q9UGP4 NSL1-201ENST00000366976 722 ntTSL 2 BASIC16.8■□□□□ 0.28
LIMD1Q9UGP4 STX1A-203ENST00000395155 783 ntTSL 2 BASIC16.8■□□□□ 0.28
LIMD1Q9UGP4 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
LIMD1Q9UGP4 MIR1908-201ENST00000410394 80 ntBASIC16.8■□□□□ 0.28
LIMD1Q9UGP4 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC16.8■□□□□ 0.28
LIMD1Q9UGP4 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC16.8■□□□□ 0.28
LIMD1Q9UGP4 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
LIMD1Q9UGP4 GALT-202ENST00000450095 1280 ntTSL 2 BASIC16.8■□□□□ 0.28
LIMD1Q9UGP4 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
LIMD1Q9UGP4 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
LIMD1Q9UGP4 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC16.8■□□□□ 0.28
LIMD1Q9UGP4 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC16.8■□□□□ 0.28
LIMD1Q9UGP4 AC098799.1-201ENST00000504752 800 ntBASIC16.8■□□□□ 0.28
LIMD1Q9UGP4 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC16.8■□□□□ 0.28
LIMD1Q9UGP4 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
LIMD1Q9UGP4 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
LIMD1Q9UGP4 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC16.8■□□□□ 0.28
LIMD1Q9UGP4 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC16.8■□□□□ 0.28
LIMD1Q9UGP4 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC16.8■□□□□ 0.28
LIMD1Q9UGP4 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
LIMD1Q9UGP4 RPS24-214ENST00000613865 538 ntTSL 5 BASIC16.8■□□□□ 0.28
LIMD1Q9UGP4 MIR6869-201ENST00000619434 62 ntBASIC16.8■□□□□ 0.28
LIMD1Q9UGP4 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC16.8■□□□□ 0.28
LIMD1Q9UGP4 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
LIMD1Q9UGP4 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC16.8■□□□□ 0.28
LIMD1Q9UGP4 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LIMD1Q9UGP4 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC16.8■□□□□ 0.28
LIMD1Q9UGP4 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 49.7 ms