Protein–RNA interactions for Protein: Q9BQ65

USB1, U6 snRNA phosphodiesterase, humanhuman

Known RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USB1Q9BQ65 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
USB1Q9BQ65 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
USB1Q9BQ65 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC14.55□□□□□ -0.08
USB1Q9BQ65 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
USB1Q9BQ65 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
USB1Q9BQ65 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC14.55□□□□□ -0.08
USB1Q9BQ65 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC14.55□□□□□ -0.08
USB1Q9BQ65 PSAT1P2-201ENST00000426107 972 ntBASIC14.55□□□□□ -0.08
USB1Q9BQ65 CNN2P2-201ENST00000443536 909 ntBASIC14.55□□□□□ -0.08
USB1Q9BQ65 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC14.55□□□□□ -0.08
USB1Q9BQ65 CNN2P3-201ENST00000450201 906 ntBASIC14.55□□□□□ -0.08
USB1Q9BQ65 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
USB1Q9BQ65 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC14.55□□□□□ -0.08
USB1Q9BQ65 AC105233.2-201ENST00000523697 349 ntBASIC14.55□□□□□ -0.08
USB1Q9BQ65 AC023442.2-201ENST00000526455 270 ntTSL 3 BASIC14.55□□□□□ -0.08
USB1Q9BQ65 AF228730.5-201ENST00000530288 346 ntBASIC14.55□□□□□ -0.08
USB1Q9BQ65 AC068389.4-201ENST00000531379 689 ntTSL 3 BASIC14.55□□□□□ -0.08
USB1Q9BQ65 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC14.55□□□□□ -0.08
USB1Q9BQ65 AL136317.3-201ENST00000618497 906 ntBASIC14.55□□□□□ -0.08
USB1Q9BQ65 AP001059.3-201ENST00000619053 235 ntBASIC14.55□□□□□ -0.08
USB1Q9BQ65 ORC5-208ENST00000626700 344 ntTSL 3 BASIC14.55□□□□□ -0.08
USB1Q9BQ65 LINC00628-201ENST00000628516 1289 ntBASIC14.55□□□□□ -0.08
USB1Q9BQ65 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
USB1Q9BQ65 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC14.55□□□□□ -0.08
USB1Q9BQ65 KRT8P39-201ENST00000396270 1433 ntBASIC14.55□□□□□ -0.08
USB1Q9BQ65 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
USB1Q9BQ65 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC14.55□□□□□ -0.08
USB1Q9BQ65 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC14.55□□□□□ -0.08
USB1Q9BQ65 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
USB1Q9BQ65 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
USB1Q9BQ65 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
USB1Q9BQ65 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
USB1Q9BQ65 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC14.55□□□□□ -0.08
USB1Q9BQ65 CICP13-201ENST00000422015 2789 ntBASIC14.55□□□□□ -0.08
USB1Q9BQ65 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
USB1Q9BQ65 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC14.55□□□□□ -0.08
USB1Q9BQ65 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
USB1Q9BQ65 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
USB1Q9BQ65 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
USB1Q9BQ65 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC14.55□□□□□ -0.08
USB1Q9BQ65 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC14.54□□□□□ -0.08
USB1Q9BQ65 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
USB1Q9BQ65 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
USB1Q9BQ65 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
USB1Q9BQ65 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
USB1Q9BQ65 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
USB1Q9BQ65 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
USB1Q9BQ65 SYBU-235ENST00000533895 3244 ntAPPRIS P4 TSL 1 (best) BASIC14.54□□□□□ -0.08
USB1Q9BQ65 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
USB1Q9BQ65 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC14.54□□□□□ -0.08
USB1Q9BQ65 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
USB1Q9BQ65 PTMS-202ENST00000389462 773 ntTSL 2 BASIC14.54□□□□□ -0.08
USB1Q9BQ65 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC14.54□□□□□ -0.08
USB1Q9BQ65 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC14.54□□□□□ -0.08
USB1Q9BQ65 SPCS2P4-201ENST00000436160 681 ntBASIC14.54□□□□□ -0.08
USB1Q9BQ65 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
USB1Q9BQ65 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC14.54□□□□□ -0.08
USB1Q9BQ65 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC14.54□□□□□ -0.08
USB1Q9BQ65 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC14.54□□□□□ -0.08
USB1Q9BQ65 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC14.54□□□□□ -0.08
USB1Q9BQ65 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC14.54□□□□□ -0.08
USB1Q9BQ65 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC14.54□□□□□ -0.08
USB1Q9BQ65 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC14.54□□□□□ -0.08
USB1Q9BQ65 AC087273.1-201ENST00000519368 529 ntTSL 2 BASIC14.54□□□□□ -0.08
USB1Q9BQ65 AC027701.1-201ENST00000520155 823 ntTSL 3 BASIC14.54□□□□□ -0.08
USB1Q9BQ65 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC14.54□□□□□ -0.08
USB1Q9BQ65 RFPL4AP1-201ENST00000530883 850 ntBASIC14.54□□□□□ -0.08
USB1Q9BQ65 SLC14A1-206ENST00000535474 1048 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
USB1Q9BQ65 NDUFC1-211ENST00000544855 1257 ntAPPRIS P1 TSL 3 BASIC14.54□□□□□ -0.08
USB1Q9BQ65 LINC01225-203ENST00000563550 1244 ntBASIC14.54□□□□□ -0.08
USB1Q9BQ65 AC027796.2-201ENST00000575326 344 ntBASIC14.54□□□□□ -0.08
USB1Q9BQ65 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC14.54□□□□□ -0.08
USB1Q9BQ65 AC022960.2-201ENST00000616300 666 ntBASIC14.54□□□□□ -0.08
USB1Q9BQ65 AC006213.5-201ENST00000619673 288 ntBASIC14.54□□□□□ -0.08
USB1Q9BQ65 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC14.54□□□□□ -0.08
USB1Q9BQ65 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC14.54□□□□□ -0.08
USB1Q9BQ65 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
USB1Q9BQ65 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC14.54□□□□□ -0.08
USB1Q9BQ65 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
USB1Q9BQ65 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
USB1Q9BQ65 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
USB1Q9BQ65 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC14.54□□□□□ -0.08
USB1Q9BQ65 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
USB1Q9BQ65 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC14.54□□□□□ -0.08
USB1Q9BQ65 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC14.54□□□□□ -0.08
USB1Q9BQ65 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
USB1Q9BQ65 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
USB1Q9BQ65 CA12-203ENST00000422263 2556 ntTSL 2 BASIC14.54□□□□□ -0.08
USB1Q9BQ65 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
USB1Q9BQ65 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
USB1Q9BQ65 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
USB1Q9BQ65 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
USB1Q9BQ65 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
USB1Q9BQ65 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
USB1Q9BQ65 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC14.53□□□□□ -0.08
USB1Q9BQ65 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
USB1Q9BQ65 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
USB1Q9BQ65 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
USB1Q9BQ65 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
USB1Q9BQ65 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms