Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 ANKRD30B-202ENST00000358984 4359 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 TERF1P3-201ENST00000505638 1227 ntBASIC5.03□□□□□ -1.6
SYNE1Q8NF91 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 SNX12-206ENST00000622259 661 ntTSL 5 BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 SCARA5-201ENST00000354914 4026 ntAPPRIS P1 TSL 2 BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 TDG-209ENST00000544861 1387 ntTSL 2 BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 RREB1-210ENST00000611109 3563 ntTSL 5 BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 SYMPK-201ENST00000245934 4195 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 ARSEP1-201ENST00000420443 635 ntBASIC5.03□□□□□ -1.6
SYNE1Q8NF91 RASL12-203ENST00000434605 982 ntTSL 2 BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 EPHB3-201ENST00000330394 4236 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 AL353732.1-201ENST00000569618 1459 ntBASIC5.03□□□□□ -1.6
SYNE1Q8NF91 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 OR8S1-201ENST00000310194 1080 ntBASIC5.03□□□□□ -1.6
SYNE1Q8NF91 AC092580.3-201ENST00000430932 139 ntBASIC5.03□□□□□ -1.6
SYNE1Q8NF91 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 TK1-204ENST00000590430 683 ntTSL 3 BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 RER1-203ENST00000378513 3000 ntTSL 3 BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 BDH1-203ENST00000392379 3546 ntAPPRIS P1 TSL 5 BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 GRIN1-207ENST00000371560 3640 ntAPPRIS ALT1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 FOXO1B-201ENST00000504678 1527 ntBASIC5.03□□□□□ -1.6
SYNE1Q8NF91 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 AC008494.3-201ENST00000606615 944 ntBASIC5.03□□□□□ -1.6
SYNE1Q8NF91 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 MIR6080-201ENST00000617359 66 ntBASIC5.03□□□□□ -1.6
SYNE1Q8NF91 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 ASH2L-201ENST00000343823 3090 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 POLE2-203ENST00000553805 496 ntTSL 2 BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 RAB34-223ENST00000636154 730 ntTSL 2 BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 AC100757.3-201ENST00000622361 1406 ntBASIC5.03□□□□□ -1.6
SYNE1Q8NF91 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC5.03□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms