Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC54Q8NEL0 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC54Q8NEL0 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC54Q8NEL0 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC14.16□□□□□ -0.14
CCDC54Q8NEL0 HAUS4P1-201ENST00000406739 1145 ntBASIC14.16□□□□□ -0.14
CCDC54Q8NEL0 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC54Q8NEL0 AC093724.1-201ENST00000448659 1027 ntBASIC14.16□□□□□ -0.14
CCDC54Q8NEL0 HS6ST1P1-201ENST00000481504 1234 ntBASIC14.16□□□□□ -0.14
CCDC54Q8NEL0 AC092910.1-201ENST00000482027 1129 ntBASIC14.16□□□□□ -0.14
CCDC54Q8NEL0 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC54Q8NEL0 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC14.16□□□□□ -0.14
CCDC54Q8NEL0 UNC93B6-202ENST00000528242 690 ntBASIC14.16□□□□□ -0.14
CCDC54Q8NEL0 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC14.16□□□□□ -0.14
CCDC54Q8NEL0 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC14.16□□□□□ -0.14
CCDC54Q8NEL0 RPL28-209ENST00000560055 670 ntTSL 3 BASIC14.16□□□□□ -0.14
CCDC54Q8NEL0 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC54Q8NEL0 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC14.16□□□□□ -0.14
CCDC54Q8NEL0 WDR33-201ENST00000322313 9471 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC54Q8NEL0 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC54Q8NEL0 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC14.16□□□□□ -0.14
CCDC54Q8NEL0 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC14.16□□□□□ -0.14
CCDC54Q8NEL0 ZNF618-207ENST00000615615 9289 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC54Q8NEL0 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC54Q8NEL0 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC54Q8NEL0 ZNF618-201ENST00000288466 9109 ntAPPRIS P3 TSL 2 BASIC14.16□□□□□ -0.14
CCDC54Q8NEL0 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC54Q8NEL0 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC14.15□□□□□ -0.14
CCDC54Q8NEL0 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC54Q8NEL0 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC54Q8NEL0 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC54Q8NEL0 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC14.15□□□□□ -0.14
CCDC54Q8NEL0 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC14.15□□□□□ -0.14
CCDC54Q8NEL0 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
CCDC54Q8NEL0 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
CCDC54Q8NEL0 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
CCDC54Q8NEL0 PCDHA3-202ENST00000532566 4594 ntBASIC14.15□□□□□ -0.14
CCDC54Q8NEL0 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC54Q8NEL0 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC54Q8NEL0 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
CCDC54Q8NEL0 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC54Q8NEL0 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC54Q8NEL0 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC14.15□□□□□ -0.14
CCDC54Q8NEL0 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC14.15□□□□□ -0.14
CCDC54Q8NEL0 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC54Q8NEL0 RHOQP3-201ENST00000437982 621 ntBASIC14.15□□□□□ -0.14
CCDC54Q8NEL0 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC54Q8NEL0 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC14.15□□□□□ -0.14
CCDC54Q8NEL0 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC14.15□□□□□ -0.14
CCDC54Q8NEL0 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC14.15□□□□□ -0.14
CCDC54Q8NEL0 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC14.15□□□□□ -0.14
CCDC54Q8NEL0 CALM3-211ENST00000598871 561 ntTSL 4 BASIC14.15□□□□□ -0.14
CCDC54Q8NEL0 AL009183.1-201ENST00000603760 355 ntBASIC14.15□□□□□ -0.14
CCDC54Q8NEL0 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC14.15□□□□□ -0.14
CCDC54Q8NEL0 EIF4G3-204ENST00000374935 5567 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
CCDC54Q8NEL0 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC54Q8NEL0 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC54Q8NEL0 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC54Q8NEL0 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC14.15□□□□□ -0.14
CCDC54Q8NEL0 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC54Q8NEL0 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC54Q8NEL0 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC54Q8NEL0 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC54Q8NEL0 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
CCDC54Q8NEL0 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
CCDC54Q8NEL0 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC54Q8NEL0 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC54Q8NEL0 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC14.15□□□□□ -0.14
CCDC54Q8NEL0 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC54Q8NEL0 C15orf59-204ENST00000569673 6573 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
CCDC54Q8NEL0 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC54Q8NEL0 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC54Q8NEL0 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC54Q8NEL0 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
CCDC54Q8NEL0 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC54Q8NEL0 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC14.15□□□□□ -0.14
CCDC54Q8NEL0 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC14.15□□□□□ -0.15
CCDC54Q8NEL0 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC54Q8NEL0 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC54Q8NEL0 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
CCDC54Q8NEL0 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
CCDC54Q8NEL0 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC14.14□□□□□ -0.15
CCDC54Q8NEL0 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC14.14□□□□□ -0.15
CCDC54Q8NEL0 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC54Q8NEL0 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC54Q8NEL0 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC54Q8NEL0 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC14.14□□□□□ -0.15
CCDC54Q8NEL0 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC14.14□□□□□ -0.15
CCDC54Q8NEL0 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC54Q8NEL0 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC54Q8NEL0 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC14.14□□□□□ -0.15
CCDC54Q8NEL0 AL031284.1-201ENST00000419297 478 ntBASIC14.14□□□□□ -0.15
CCDC54Q8NEL0 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC54Q8NEL0 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC14.14□□□□□ -0.15
CCDC54Q8NEL0 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC54Q8NEL0 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC54Q8NEL0 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC14.14□□□□□ -0.15
CCDC54Q8NEL0 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC14.14□□□□□ -0.15
CCDC54Q8NEL0 POLD4-207ENST00000531239 584 ntTSL 2 BASIC14.14□□□□□ -0.15
CCDC54Q8NEL0 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC14.14□□□□□ -0.15
CCDC54Q8NEL0 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms