Protein–RNA interactions for Protein: Q7Z3Y7

KRT28, Keratin, type I cytoskeletal 28, humanhuman

Predictions only

Length 464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT28Q7Z3Y7 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC21.52■■□□□ 1.04
KRT28Q7Z3Y7 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
KRT28Q7Z3Y7 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC21.52■■□□□ 1.04
KRT28Q7Z3Y7 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC21.52■■□□□ 1.04
KRT28Q7Z3Y7 FNTAP2-201ENST00000430308 634 ntBASIC21.52■■□□□ 1.04
KRT28Q7Z3Y7 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC21.52■■□□□ 1.04
KRT28Q7Z3Y7 AC005077.2-201ENST00000449786 690 ntBASIC21.52■■□□□ 1.04
KRT28Q7Z3Y7 KRT18P43-201ENST00000469825 1281 ntBASIC21.52■■□□□ 1.04
KRT28Q7Z3Y7 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
KRT28Q7Z3Y7 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC21.52■■□□□ 1.04
KRT28Q7Z3Y7 AP006547.1-201ENST00000563435 692 ntBASIC21.52■■□□□ 1.04
KRT28Q7Z3Y7 AC097359.3-201ENST00000603982 1210 ntBASIC21.52■■□□□ 1.04
KRT28Q7Z3Y7 AC138951.2-201ENST00000623455 1161 ntBASIC21.52■■□□□ 1.04
KRT28Q7Z3Y7 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
KRT28Q7Z3Y7 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
KRT28Q7Z3Y7 AHCYP2-201ENST00000430630 1300 ntBASIC21.52■■□□□ 1.03
KRT28Q7Z3Y7 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.03
KRT28Q7Z3Y7 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
KRT28Q7Z3Y7 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC21.52■■□□□ 1.03
KRT28Q7Z3Y7 AC138028.6-201ENST00000616106 1482 ntBASIC21.52■■□□□ 1.03
KRT28Q7Z3Y7 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC21.51■■□□□ 1.03
KRT28Q7Z3Y7 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
KRT28Q7Z3Y7 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC21.51■■□□□ 1.03
KRT28Q7Z3Y7 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
KRT28Q7Z3Y7 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
KRT28Q7Z3Y7 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
KRT28Q7Z3Y7 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
KRT28Q7Z3Y7 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
KRT28Q7Z3Y7 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
KRT28Q7Z3Y7 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
KRT28Q7Z3Y7 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC21.51■■□□□ 1.03
KRT28Q7Z3Y7 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
KRT28Q7Z3Y7 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
KRT28Q7Z3Y7 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC21.51■■□□□ 1.03
KRT28Q7Z3Y7 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC21.51■■□□□ 1.03
KRT28Q7Z3Y7 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
KRT28Q7Z3Y7 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
KRT28Q7Z3Y7 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC21.51■■□□□ 1.03
KRT28Q7Z3Y7 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
KRT28Q7Z3Y7 AL450472.2-201ENST00000603663 1156 ntBASIC21.51■■□□□ 1.03
KRT28Q7Z3Y7 AC107373.2-201ENST00000607735 490 ntBASIC21.51■■□□□ 1.03
KRT28Q7Z3Y7 AC145423.3-201ENST00000615987 467 ntBASIC21.51■■□□□ 1.03
KRT28Q7Z3Y7 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC21.51■■□□□ 1.03
KRT28Q7Z3Y7 AC018470.1-201ENST00000624790 3129 ntBASIC21.51■■□□□ 1.03
KRT28Q7Z3Y7 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC21.51■■□□□ 1.03
KRT28Q7Z3Y7 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
KRT28Q7Z3Y7 HTR7P1-202ENST00000624664 4411 ntBASIC21.51■■□□□ 1.03
KRT28Q7Z3Y7 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC21.51■■□□□ 1.03
KRT28Q7Z3Y7 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
KRT28Q7Z3Y7 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
KRT28Q7Z3Y7 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC21.51■■□□□ 1.03
KRT28Q7Z3Y7 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC21.51■■□□□ 1.03
KRT28Q7Z3Y7 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC21.51■■□□□ 1.03
KRT28Q7Z3Y7 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC21.51■■□□□ 1.03
KRT28Q7Z3Y7 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC21.5■■□□□ 1.03
KRT28Q7Z3Y7 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
KRT28Q7Z3Y7 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
KRT28Q7Z3Y7 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
KRT28Q7Z3Y7 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
KRT28Q7Z3Y7 AC005915.1-201ENST00000624912 2018 ntBASIC21.5■■□□□ 1.03
KRT28Q7Z3Y7 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
KRT28Q7Z3Y7 HLA-A-202ENST00000376806 1854 ntBASIC21.5■■□□□ 1.03
KRT28Q7Z3Y7 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
KRT28Q7Z3Y7 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
KRT28Q7Z3Y7 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
KRT28Q7Z3Y7 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
KRT28Q7Z3Y7 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
KRT28Q7Z3Y7 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC21.5■■□□□ 1.03
KRT28Q7Z3Y7 AC004898.1-201ENST00000451057 766 ntBASIC21.5■■□□□ 1.03
KRT28Q7Z3Y7 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
KRT28Q7Z3Y7 SCARNA20.5-201ENST00000516991 142 ntBASIC21.5■■□□□ 1.03
KRT28Q7Z3Y7 AC104758.2-201ENST00000562716 483 ntTSL 3 BASIC21.5■■□□□ 1.03
KRT28Q7Z3Y7 AC104982.3-201ENST00000581995 514 ntBASIC21.5■■□□□ 1.03
KRT28Q7Z3Y7 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC21.5■■□□□ 1.03
KRT28Q7Z3Y7 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC21.5■■□□□ 1.03
KRT28Q7Z3Y7 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC21.5■■□□□ 1.03
KRT28Q7Z3Y7 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC21.5■■□□□ 1.03
KRT28Q7Z3Y7 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
KRT28Q7Z3Y7 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
KRT28Q7Z3Y7 REXO1L1P-202ENST00000608646 1974 ntBASIC21.5■■□□□ 1.03
KRT28Q7Z3Y7 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
KRT28Q7Z3Y7 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
KRT28Q7Z3Y7 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC21.5■■□□□ 1.03
KRT28Q7Z3Y7 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
KRT28Q7Z3Y7 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
KRT28Q7Z3Y7 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
KRT28Q7Z3Y7 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
KRT28Q7Z3Y7 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC21.49■■□□□ 1.03
KRT28Q7Z3Y7 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
KRT28Q7Z3Y7 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
KRT28Q7Z3Y7 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
KRT28Q7Z3Y7 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC21.49■■□□□ 1.03
KRT28Q7Z3Y7 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC21.49■■□□□ 1.03
KRT28Q7Z3Y7 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
KRT28Q7Z3Y7 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
KRT28Q7Z3Y7 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
KRT28Q7Z3Y7 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
KRT28Q7Z3Y7 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC21.49■■□□□ 1.03
KRT28Q7Z3Y7 GUK1-206ENST00000366723 845 ntTSL 5 BASIC21.49■■□□□ 1.03
KRT28Q7Z3Y7 MIR1202-201ENST00000408529 83 ntBASIC21.49■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms