Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC14.97□□□□□ -0.01
NUP54Q7Z3B4 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC14.97□□□□□ -0.01
NUP54Q7Z3B4 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
NUP54Q7Z3B4 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC14.97□□□□□ -0.01
NUP54Q7Z3B4 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC14.97□□□□□ -0.01
NUP54Q7Z3B4 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC14.97□□□□□ -0.01
NUP54Q7Z3B4 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
NUP54Q7Z3B4 AC006449.6-201ENST00000612330 2296 ntBASIC14.97□□□□□ -0.01
NUP54Q7Z3B4 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
NUP54Q7Z3B4 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
NUP54Q7Z3B4 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
NUP54Q7Z3B4 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
NUP54Q7Z3B4 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC14.97□□□□□ -0.01
NUP54Q7Z3B4 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
NUP54Q7Z3B4 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
NUP54Q7Z3B4 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
NUP54Q7Z3B4 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC14.97□□□□□ -0.01
NUP54Q7Z3B4 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
NUP54Q7Z3B4 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
NUP54Q7Z3B4 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC14.97□□□□□ -0.01
NUP54Q7Z3B4 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
NUP54Q7Z3B4 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC14.97□□□□□ -0.01
NUP54Q7Z3B4 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
NUP54Q7Z3B4 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC14.97□□□□□ -0.01
NUP54Q7Z3B4 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
NUP54Q7Z3B4 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC14.97□□□□□ -0.01
NUP54Q7Z3B4 AC005052.1-201ENST00000625181 2492 ntBASIC14.97□□□□□ -0.01
NUP54Q7Z3B4 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
NUP54Q7Z3B4 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
NUP54Q7Z3B4 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.01
NUP54Q7Z3B4 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC14.96□□□□□ -0.01
NUP54Q7Z3B4 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC14.96□□□□□ -0.01
NUP54Q7Z3B4 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
NUP54Q7Z3B4 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
NUP54Q7Z3B4 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC14.96□□□□□ -0.01
NUP54Q7Z3B4 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC14.96□□□□□ -0.01
NUP54Q7Z3B4 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
NUP54Q7Z3B4 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
NUP54Q7Z3B4 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
NUP54Q7Z3B4 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
NUP54Q7Z3B4 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
NUP54Q7Z3B4 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
NUP54Q7Z3B4 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.01
NUP54Q7Z3B4 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
NUP54Q7Z3B4 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
NUP54Q7Z3B4 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
NUP54Q7Z3B4 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC14.96□□□□□ -0.01
NUP54Q7Z3B4 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
NUP54Q7Z3B4 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC14.96□□□□□ -0.01
NUP54Q7Z3B4 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC14.96□□□□□ -0.01
NUP54Q7Z3B4 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC14.96□□□□□ -0.01
NUP54Q7Z3B4 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
NUP54Q7Z3B4 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC14.96□□□□□ -0.01
NUP54Q7Z3B4 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.01
NUP54Q7Z3B4 MIR4321-201ENST00000592276 80 ntBASIC14.96□□□□□ -0.01
NUP54Q7Z3B4 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC14.96□□□□□ -0.01
NUP54Q7Z3B4 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
NUP54Q7Z3B4 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC14.96□□□□□ -0.01
NUP54Q7Z3B4 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
NUP54Q7Z3B4 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC14.96□□□□□ -0.01
NUP54Q7Z3B4 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
NUP54Q7Z3B4 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
NUP54Q7Z3B4 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
NUP54Q7Z3B4 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
NUP54Q7Z3B4 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC14.96□□□□□ -0.02
NUP54Q7Z3B4 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
NUP54Q7Z3B4 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.02
NUP54Q7Z3B4 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
NUP54Q7Z3B4 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC14.95□□□□□ -0.02
NUP54Q7Z3B4 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
NUP54Q7Z3B4 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
NUP54Q7Z3B4 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
NUP54Q7Z3B4 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.02
NUP54Q7Z3B4 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
NUP54Q7Z3B4 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
NUP54Q7Z3B4 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC14.95□□□□□ -0.02
NUP54Q7Z3B4 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
NUP54Q7Z3B4 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC14.95□□□□□ -0.02
NUP54Q7Z3B4 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
NUP54Q7Z3B4 AL596087.1-201ENST00000400979 1969 ntBASIC14.95□□□□□ -0.02
NUP54Q7Z3B4 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
NUP54Q7Z3B4 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
NUP54Q7Z3B4 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
NUP54Q7Z3B4 CD81-202ENST00000381036 880 ntTSL 3 BASIC14.95□□□□□ -0.02
NUP54Q7Z3B4 GGCT-205ENST00000409436 954 ntTSL 3 BASIC14.95□□□□□ -0.02
NUP54Q7Z3B4 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC14.95□□□□□ -0.02
NUP54Q7Z3B4 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC14.95□□□□□ -0.02
NUP54Q7Z3B4 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC14.95□□□□□ -0.02
NUP54Q7Z3B4 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC14.95□□□□□ -0.02
NUP54Q7Z3B4 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
NUP54Q7Z3B4 AC061975.2-201ENST00000581722 295 ntBASIC14.95□□□□□ -0.02
NUP54Q7Z3B4 LSM12-202ENST00000585388 942 ntTSL 3 BASIC14.95□□□□□ -0.02
NUP54Q7Z3B4 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
NUP54Q7Z3B4 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
NUP54Q7Z3B4 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
NUP54Q7Z3B4 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
NUP54Q7Z3B4 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
NUP54Q7Z3B4 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
NUP54Q7Z3B4 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC14.95□□□□□ -0.02
NUP54Q7Z3B4 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC14.95□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 72.2 ms