Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC16.41■□□□□ 0.22
USP39Q53GS9 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC16.41■□□□□ 0.22
USP39Q53GS9 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
USP39Q53GS9 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
USP39Q53GS9 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC16.41■□□□□ 0.22
USP39Q53GS9 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
USP39Q53GS9 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
USP39Q53GS9 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
USP39Q53GS9 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
USP39Q53GS9 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
USP39Q53GS9 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC16.41■□□□□ 0.22
USP39Q53GS9 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC16.41■□□□□ 0.22
USP39Q53GS9 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
USP39Q53GS9 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
USP39Q53GS9 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC16.41■□□□□ 0.22
USP39Q53GS9 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
USP39Q53GS9 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
USP39Q53GS9 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
USP39Q53GS9 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
USP39Q53GS9 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC16.4■□□□□ 0.22
USP39Q53GS9 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC16.4■□□□□ 0.22
USP39Q53GS9 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC16.4■□□□□ 0.22
USP39Q53GS9 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
USP39Q53GS9 FLJ16779-201ENST00000612722 7638 ntBASIC16.4■□□□□ 0.22
USP39Q53GS9 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
USP39Q53GS9 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
USP39Q53GS9 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
USP39Q53GS9 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
USP39Q53GS9 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC16.4■□□□□ 0.22
USP39Q53GS9 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
USP39Q53GS9 PCDHB17P-201ENST00000539533 2393 ntBASIC16.4■□□□□ 0.22
USP39Q53GS9 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
USP39Q53GS9 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC16.4■□□□□ 0.22
USP39Q53GS9 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
USP39Q53GS9 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC16.4■□□□□ 0.22
USP39Q53GS9 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
USP39Q53GS9 AC010336.2-201ENST00000564226 506 ntBASIC16.4■□□□□ 0.22
USP39Q53GS9 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC16.4■□□□□ 0.22
USP39Q53GS9 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC16.4■□□□□ 0.22
USP39Q53GS9 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC16.4■□□□□ 0.22
USP39Q53GS9 NAA38-207ENST00000576861 556 ntTSL 3 BASIC16.4■□□□□ 0.22
USP39Q53GS9 AC132938.2-201ENST00000579188 680 ntBASIC16.4■□□□□ 0.22
USP39Q53GS9 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC16.4■□□□□ 0.22
USP39Q53GS9 CHCHD2P3-201ENST00000603038 451 ntBASIC16.4■□□□□ 0.22
USP39Q53GS9 MIR6805-201ENST00000615055 62 ntBASIC16.4■□□□□ 0.22
USP39Q53GS9 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC16.4■□□□□ 0.22
USP39Q53GS9 AL591163.1-201ENST00000641757 987 ntBASIC16.4■□□□□ 0.22
USP39Q53GS9 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC16.4■□□□□ 0.22
USP39Q53GS9 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
USP39Q53GS9 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
USP39Q53GS9 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
USP39Q53GS9 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC16.4■□□□□ 0.22
USP39Q53GS9 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC16.4■□□□□ 0.22
USP39Q53GS9 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
USP39Q53GS9 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
USP39Q53GS9 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
USP39Q53GS9 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
USP39Q53GS9 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC16.4■□□□□ 0.22
USP39Q53GS9 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC16.4■□□□□ 0.22
USP39Q53GS9 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
USP39Q53GS9 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
USP39Q53GS9 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
USP39Q53GS9 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
USP39Q53GS9 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
USP39Q53GS9 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
USP39Q53GS9 KRT8P39-201ENST00000396270 1433 ntBASIC16.39■□□□□ 0.21
USP39Q53GS9 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC16.39■□□□□ 0.21
USP39Q53GS9 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC16.39■□□□□ 0.21
USP39Q53GS9 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
USP39Q53GS9 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
USP39Q53GS9 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
USP39Q53GS9 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC16.39■□□□□ 0.21
USP39Q53GS9 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
USP39Q53GS9 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC16.39■□□□□ 0.21
USP39Q53GS9 MEP1AP4-201ENST00000423244 1087 ntBASIC16.39■□□□□ 0.21
USP39Q53GS9 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC16.39■□□□□ 0.21
USP39Q53GS9 AC044860.1-202ENST00000559481 777 ntBASIC16.39■□□□□ 0.21
USP39Q53GS9 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC16.39■□□□□ 0.21
USP39Q53GS9 AC106886.1-201ENST00000568660 600 ntBASIC16.39■□□□□ 0.21
USP39Q53GS9 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC16.39■□□□□ 0.21
USP39Q53GS9 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC16.39■□□□□ 0.21
USP39Q53GS9 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC16.39■□□□□ 0.21
USP39Q53GS9 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
USP39Q53GS9 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC16.39■□□□□ 0.21
USP39Q53GS9 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
USP39Q53GS9 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
USP39Q53GS9 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
USP39Q53GS9 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
USP39Q53GS9 AL671710.1-201ENST00000610245 2349 ntBASIC16.39■□□□□ 0.21
USP39Q53GS9 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
USP39Q53GS9 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC16.38■□□□□ 0.21
USP39Q53GS9 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC16.38■□□□□ 0.21
USP39Q53GS9 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC16.38■□□□□ 0.21
USP39Q53GS9 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
USP39Q53GS9 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
USP39Q53GS9 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
USP39Q53GS9 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC16.38■□□□□ 0.21
USP39Q53GS9 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
USP39Q53GS9 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
USP39Q53GS9 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms