Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC14.95□□□□□ -0.02
RNF4P78317 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC14.95□□□□□ -0.02
RNF4P78317 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
RNF4P78317 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
RNF4P78317 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC14.95□□□□□ -0.02
RNF4P78317 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC14.95□□□□□ -0.02
RNF4P78317 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC14.95□□□□□ -0.02
RNF4P78317 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC14.95□□□□□ -0.02
RNF4P78317 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
RNF4P78317 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
RNF4P78317 HMGN1P19-201ENST00000436976 333 ntBASIC14.95□□□□□ -0.02
RNF4P78317 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC14.95□□□□□ -0.02
RNF4P78317 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC14.95□□□□□ -0.02
RNF4P78317 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
RNF4P78317 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC14.95□□□□□ -0.02
RNF4P78317 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC14.95□□□□□ -0.02
RNF4P78317 AL390754.1-201ENST00000619088 582 ntBASIC14.95□□□□□ -0.02
RNF4P78317 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
RNF4P78317 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
RNF4P78317 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
RNF4P78317 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
RNF4P78317 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
RNF4P78317 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC14.95□□□□□ -0.02
RNF4P78317 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
RNF4P78317 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
RNF4P78317 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC14.95□□□□□ -0.02
RNF4P78317 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
RNF4P78317 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
RNF4P78317 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC14.95□□□□□ -0.02
RNF4P78317 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
RNF4P78317 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC14.95□□□□□ -0.02
RNF4P78317 PCDH8P1-201ENST00000428983 2773 ntBASIC14.95□□□□□ -0.02
RNF4P78317 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
RNF4P78317 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
RNF4P78317 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
RNF4P78317 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
RNF4P78317 AL136982.4-201ENST00000437689 1740 ntBASIC14.95□□□□□ -0.02
RNF4P78317 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
RNF4P78317 AL596087.1-201ENST00000400979 1969 ntBASIC14.94□□□□□ -0.02
RNF4P78317 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
RNF4P78317 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC14.94□□□□□ -0.02
RNF4P78317 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC14.94□□□□□ -0.02
RNF4P78317 SP100-205ENST00000409824 1802 ntTSL 5 BASIC14.94□□□□□ -0.02
RNF4P78317 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
RNF4P78317 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC14.94□□□□□ -0.02
RNF4P78317 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
RNF4P78317 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
RNF4P78317 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
RNF4P78317 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
RNF4P78317 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
RNF4P78317 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC14.94□□□□□ -0.02
RNF4P78317 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
RNF4P78317 HAUS4P1-201ENST00000406739 1145 ntBASIC14.94□□□□□ -0.02
RNF4P78317 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
RNF4P78317 RPL37AP1-201ENST00000412502 279 ntBASIC14.94□□□□□ -0.02
RNF4P78317 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC14.94□□□□□ -0.02
RNF4P78317 BASP1P1-201ENST00000430708 665 ntBASIC14.94□□□□□ -0.02
RNF4P78317 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC14.94□□□□□ -0.02
RNF4P78317 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
RNF4P78317 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC14.94□□□□□ -0.02
RNF4P78317 LY6E-204ENST00000519546 971 ntTSL 2 BASIC14.94□□□□□ -0.02
RNF4P78317 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC14.94□□□□□ -0.02
RNF4P78317 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
RNF4P78317 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
RNF4P78317 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
RNF4P78317 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
RNF4P78317 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
RNF4P78317 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC14.94□□□□□ -0.02
RNF4P78317 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
RNF4P78317 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC14.94□□□□□ -0.02
RNF4P78317 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
RNF4P78317 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
RNF4P78317 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
RNF4P78317 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
RNF4P78317 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
RNF4P78317 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
RNF4P78317 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
RNF4P78317 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
RNF4P78317 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC14.94□□□□□ -0.02
RNF4P78317 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
RNF4P78317 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC14.93□□□□□ -0.02
RNF4P78317 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC14.93□□□□□ -0.02
RNF4P78317 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
RNF4P78317 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
RNF4P78317 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
RNF4P78317 AL691432.1-201ENST00000596308 1422 ntBASIC14.93□□□□□ -0.02
RNF4P78317 AC100757.3-201ENST00000622361 1406 ntBASIC14.93□□□□□ -0.02
RNF4P78317 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
RNF4P78317 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
RNF4P78317 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC14.93□□□□□ -0.02
RNF4P78317 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC14.93□□□□□ -0.02
RNF4P78317 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC14.93□□□□□ -0.02
RNF4P78317 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC14.93□□□□□ -0.02
RNF4P78317 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC14.93□□□□□ -0.02
RNF4P78317 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
RNF4P78317 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
RNF4P78317 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
RNF4P78317 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
RNF4P78317 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
RNF4P78317 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 63.7 ms