Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 PHLDB2-203ENST00000412622 5996 ntTSL 5 BASIC18.18■□□□□ 0.5
TPM4P67936 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
TPM4P67936 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC18.18■□□□□ 0.5
TPM4P67936 MDH2-205ENST00000461263 648 ntTSL 2 BASIC18.18■□□□□ 0.5
TPM4P67936 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC18.18■□□□□ 0.5
TPM4P67936 AC006557.2-201ENST00000592985 1240 ntBASIC18.18■□□□□ 0.5
TPM4P67936 NPAP1P7-201ENST00000613027 823 ntBASIC18.18■□□□□ 0.5
TPM4P67936 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC18.18■□□□□ 0.5
TPM4P67936 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TPM4P67936 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
TPM4P67936 FZD5-201ENST00000295417 6708 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TPM4P67936 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
TPM4P67936 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TPM4P67936 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC18.18■□□□□ 0.5
TPM4P67936 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
TPM4P67936 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC18.18■□□□□ 0.5
TPM4P67936 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
TPM4P67936 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
TPM4P67936 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
TPM4P67936 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TPM4P67936 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TPM4P67936 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
TPM4P67936 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC18.17■□□□□ 0.5
TPM4P67936 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TPM4P67936 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC18.17■□□□□ 0.5
TPM4P67936 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC18.17■□□□□ 0.5
TPM4P67936 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
TPM4P67936 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TPM4P67936 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TPM4P67936 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
TPM4P67936 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TPM4P67936 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC18.17■□□□□ 0.5
TPM4P67936 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
TPM4P67936 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TPM4P67936 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TPM4P67936 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TPM4P67936 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TPM4P67936 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
TPM4P67936 ELK2BP-201ENST00000415014 1224 ntBASIC18.17■□□□□ 0.5
TPM4P67936 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC18.17■□□□□ 0.5
TPM4P67936 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC18.17■□□□□ 0.5
TPM4P67936 SCARNA2-201ENST00000458748 420 ntBASIC18.17■□□□□ 0.5
TPM4P67936 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC18.17■□□□□ 0.5
TPM4P67936 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC18.17■□□□□ 0.5
TPM4P67936 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC18.17■□□□□ 0.5
TPM4P67936 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC18.17■□□□□ 0.5
TPM4P67936 AC092119.3-201ENST00000612618 583 ntBASIC18.17■□□□□ 0.5
TPM4P67936 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC18.17■□□□□ 0.5
TPM4P67936 AP000550.4-202ENST00000639755 178 ntBASIC18.17■□□□□ 0.5
TPM4P67936 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
TPM4P67936 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC18.17■□□□□ 0.5
TPM4P67936 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
TPM4P67936 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TPM4P67936 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TPM4P67936 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
TPM4P67936 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
TPM4P67936 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
TPM4P67936 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
TPM4P67936 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC18.17■□□□□ 0.5
TPM4P67936 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
TPM4P67936 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
TPM4P67936 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
TPM4P67936 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TPM4P67936 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
TPM4P67936 PAN3-AS1-201ENST00000563843 1351 ntBASIC18.17■□□□□ 0.5
TPM4P67936 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TPM4P67936 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
TPM4P67936 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC18.16■□□□□ 0.5
TPM4P67936 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
TPM4P67936 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
TPM4P67936 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
TPM4P67936 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
TPM4P67936 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TPM4P67936 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC18.16■□□□□ 0.5
TPM4P67936 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC18.16■□□□□ 0.5
TPM4P67936 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
TPM4P67936 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TPM4P67936 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
TPM4P67936 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TPM4P67936 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
TPM4P67936 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
TPM4P67936 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC18.16■□□□□ 0.5
TPM4P67936 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TPM4P67936 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC18.16■□□□□ 0.5
TPM4P67936 HAUS4P1-201ENST00000406739 1145 ntBASIC18.16■□□□□ 0.5
TPM4P67936 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TPM4P67936 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC18.16■□□□□ 0.5
TPM4P67936 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC18.16■□□□□ 0.5
TPM4P67936 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC18.16■□□□□ 0.5
TPM4P67936 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
TPM4P67936 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC18.16■□□□□ 0.5
TPM4P67936 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC18.16■□□□□ 0.5
TPM4P67936 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
TPM4P67936 AC012569.1-201ENST00000591191 1524 ntBASIC18.16■□□□□ 0.5
TPM4P67936 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TPM4P67936 ARL10-201ENST00000310389 10845 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
TPM4P67936 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TPM4P67936 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
TPM4P67936 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
TPM4P67936 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms