Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
LIMK1P53667 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC15.92■□□□□ 0.14
LIMK1P53667 GCK-209ENST00000616242 2260 ntTSL 5 BASIC15.92■□□□□ 0.14
LIMK1P53667 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
LIMK1P53667 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
LIMK1P53667 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC15.91■□□□□ 0.14
LIMK1P53667 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
LIMK1P53667 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
LIMK1P53667 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
LIMK1P53667 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC15.91■□□□□ 0.14
LIMK1P53667 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
LIMK1P53667 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
LIMK1P53667 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
LIMK1P53667 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
LIMK1P53667 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
LIMK1P53667 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
LIMK1P53667 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC15.91■□□□□ 0.14
LIMK1P53667 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC15.91■□□□□ 0.14
LIMK1P53667 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC15.91■□□□□ 0.14
LIMK1P53667 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC15.91■□□□□ 0.14
LIMK1P53667 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC15.91■□□□□ 0.14
LIMK1P53667 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC15.91■□□□□ 0.14
LIMK1P53667 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
LIMK1P53667 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC15.91■□□□□ 0.14
LIMK1P53667 AC106872.11-201ENST00000605838 421 ntBASIC15.91■□□□□ 0.14
LIMK1P53667 Z84492.1-201ENST00000606589 408 ntAPPRIS P1 TSL 3 BASIC15.91■□□□□ 0.14
LIMK1P53667 PPA1-206ENST00000625364 644 ntTSL 5 BASIC15.91■□□□□ 0.14
LIMK1P53667 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC15.91■□□□□ 0.14
LIMK1P53667 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
LIMK1P53667 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
LIMK1P53667 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
LIMK1P53667 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
LIMK1P53667 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
LIMK1P53667 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
LIMK1P53667 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
LIMK1P53667 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC15.91■□□□□ 0.14
LIMK1P53667 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
LIMK1P53667 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
LIMK1P53667 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC15.91■□□□□ 0.14
LIMK1P53667 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC15.91■□□□□ 0.14
LIMK1P53667 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
LIMK1P53667 CDC14C-201ENST00000428251 1719 ntBASIC15.91■□□□□ 0.14
LIMK1P53667 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
LIMK1P53667 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
LIMK1P53667 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
LIMK1P53667 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC15.91■□□□□ 0.14
LIMK1P53667 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC15.91■□□□□ 0.14
LIMK1P53667 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC15.91■□□□□ 0.14
LIMK1P53667 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
LIMK1P53667 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC15.91■□□□□ 0.14
LIMK1P53667 CLK3P2-201ENST00000427566 1453 ntBASIC15.91■□□□□ 0.14
LIMK1P53667 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC15.91■□□□□ 0.14
LIMK1P53667 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC15.9■□□□□ 0.14
LIMK1P53667 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
LIMK1P53667 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC15.9■□□□□ 0.14
LIMK1P53667 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC15.9■□□□□ 0.14
LIMK1P53667 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
LIMK1P53667 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
LIMK1P53667 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
LIMK1P53667 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LIMK1P53667 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC15.9■□□□□ 0.14
LIMK1P53667 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
LIMK1P53667 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
LIMK1P53667 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
LIMK1P53667 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
LIMK1P53667 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC15.9■□□□□ 0.14
LIMK1P53667 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LIMK1P53667 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LIMK1P53667 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
LIMK1P53667 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC15.9■□□□□ 0.14
LIMK1P53667 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC15.9■□□□□ 0.14
LIMK1P53667 RNA5SP423-201ENST00000517127 109 ntBASIC15.9■□□□□ 0.14
LIMK1P53667 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC15.9■□□□□ 0.14
LIMK1P53667 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC15.9■□□□□ 0.14
LIMK1P53667 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC15.9■□□□□ 0.14
LIMK1P53667 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC15.9■□□□□ 0.14
LIMK1P53667 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
LIMK1P53667 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC15.9■□□□□ 0.14
LIMK1P53667 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC15.9■□□□□ 0.14
LIMK1P53667 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
LIMK1P53667 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LIMK1P53667 AC103702.1-201ENST00000548801 2630 ntBASIC15.9■□□□□ 0.14
LIMK1P53667 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
LIMK1P53667 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LIMK1P53667 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
LIMK1P53667 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LIMK1P53667 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LIMK1P53667 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC15.9■□□□□ 0.14
LIMK1P53667 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
LIMK1P53667 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LIMK1P53667 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
LIMK1P53667 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
LIMK1P53667 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LIMK1P53667 AL513477.1-201ENST00000602865 2407 ntBASIC15.89■□□□□ 0.13
LIMK1P53667 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
LIMK1P53667 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
LIMK1P53667 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC15.89■□□□□ 0.13
LIMK1P53667 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LIMK1P53667 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
LIMK1P53667 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC15.89■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 61.2 ms