Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL8A1P27658 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL8A1P27658 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC14.07□□□□□ -0.16
COL8A1P27658 AC106820.2-201ENST00000563775 3264 ntBASIC14.07□□□□□ -0.16
COL8A1P27658 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL8A1P27658 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL8A1P27658 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL8A1P27658 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
COL8A1P27658 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL8A1P27658 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
COL8A1P27658 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL8A1P27658 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL8A1P27658 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL8A1P27658 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
COL8A1P27658 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
COL8A1P27658 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL8A1P27658 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC14.07□□□□□ -0.16
COL8A1P27658 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL8A1P27658 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
COL8A1P27658 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
COL8A1P27658 IL12A-202ENST00000466512 1283 ntTSL 3 BASIC14.07□□□□□ -0.16
COL8A1P27658 HAPLN1-206ENST00000514416 1145 ntTSL 5 BASIC14.07□□□□□ -0.16
COL8A1P27658 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
COL8A1P27658 AP000812.2-201ENST00000538934 718 ntBASIC14.07□□□□□ -0.16
COL8A1P27658 AC105129.2-201ENST00000559536 390 ntBASIC14.07□□□□□ -0.16
COL8A1P27658 CCNB2-203ENST00000559622 1064 ntTSL 5 BASIC14.07□□□□□ -0.16
COL8A1P27658 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC14.07□□□□□ -0.16
COL8A1P27658 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC14.07□□□□□ -0.16
COL8A1P27658 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL8A1P27658 HCG18-245ENST00000602550 559 ntTSL 4 BASIC14.07□□□□□ -0.16
COL8A1P27658 AC074044.1-201ENST00000609673 707 ntBASIC14.07□□□□□ -0.16
COL8A1P27658 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC14.07□□□□□ -0.16
COL8A1P27658 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC14.07□□□□□ -0.16
COL8A1P27658 AC015967.2-201ENST00000624092 234 ntBASIC14.07□□□□□ -0.16
COL8A1P27658 AC006435.4-201ENST00000625037 234 ntBASIC14.07□□□□□ -0.16
COL8A1P27658 AL356737.1-201ENST00000634391 234 ntBASIC14.07□□□□□ -0.16
COL8A1P27658 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL8A1P27658 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
COL8A1P27658 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
COL8A1P27658 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL8A1P27658 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL8A1P27658 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC14.07□□□□□ -0.16
COL8A1P27658 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC14.07□□□□□ -0.16
COL8A1P27658 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL8A1P27658 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
COL8A1P27658 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC14.07□□□□□ -0.16
COL8A1P27658 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL8A1P27658 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
COL8A1P27658 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL8A1P27658 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
COL8A1P27658 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
COL8A1P27658 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
COL8A1P27658 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL8A1P27658 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL8A1P27658 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL8A1P27658 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC14.06□□□□□ -0.16
COL8A1P27658 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
COL8A1P27658 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
COL8A1P27658 TP73-213ENST00000604479 1623 ntTSL 5 BASIC14.06□□□□□ -0.16
COL8A1P27658 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL8A1P27658 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL8A1P27658 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
COL8A1P27658 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC14.06□□□□□ -0.16
COL8A1P27658 APOA1-205ENST00000375329 927 ntTSL 2 BASIC14.06□□□□□ -0.16
COL8A1P27658 LST1-204ENST00000376086 554 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
COL8A1P27658 BTBD6P1-201ENST00000412176 1267 ntBASIC14.06□□□□□ -0.16
COL8A1P27658 RHOA-206ENST00000454011 889 ntTSL 2 BASIC14.06□□□□□ -0.16
COL8A1P27658 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC14.06□□□□□ -0.16
COL8A1P27658 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC14.06□□□□□ -0.16
COL8A1P27658 FANCA-204ENST00000534992 1088 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
COL8A1P27658 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC14.06□□□□□ -0.16
COL8A1P27658 AL359711.2-201ENST00000563105 872 ntBASIC14.06□□□□□ -0.16
COL8A1P27658 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
COL8A1P27658 AC026979.3-201ENST00000607315 403 ntBASIC14.06□□□□□ -0.16
COL8A1P27658 AC244669.2-201ENST00000612320 853 ntBASIC14.06□□□□□ -0.16
COL8A1P27658 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL8A1P27658 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
COL8A1P27658 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
COL8A1P27658 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL8A1P27658 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
COL8A1P27658 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC14.06□□□□□ -0.16
COL8A1P27658 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL8A1P27658 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC14.06□□□□□ -0.16
COL8A1P27658 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
COL8A1P27658 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC14.06□□□□□ -0.16
COL8A1P27658 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL8A1P27658 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
COL8A1P27658 DEK-201ENST00000244776 1441 ntTSL 2 BASIC14.06□□□□□ -0.16
COL8A1P27658 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL8A1P27658 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC14.06□□□□□ -0.16
COL8A1P27658 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
COL8A1P27658 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
COL8A1P27658 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
COL8A1P27658 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC14.05□□□□□ -0.16
COL8A1P27658 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC14.05□□□□□ -0.16
COL8A1P27658 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
COL8A1P27658 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
COL8A1P27658 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
COL8A1P27658 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC14.05□□□□□ -0.16
COL8A1P27658 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms