Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
MSH3P20585 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
MSH3P20585 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
MSH3P20585 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC16.12■□□□□ 0.17
MSH3P20585 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
MSH3P20585 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
MSH3P20585 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
MSH3P20585 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
MSH3P20585 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC16.12■□□□□ 0.17
MSH3P20585 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
MSH3P20585 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
MSH3P20585 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
MSH3P20585 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
MSH3P20585 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
MSH3P20585 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC16.11■□□□□ 0.17
MSH3P20585 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
MSH3P20585 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
MSH3P20585 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC16.11■□□□□ 0.17
MSH3P20585 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC16.11■□□□□ 0.17
MSH3P20585 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC16.11■□□□□ 0.17
MSH3P20585 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
MSH3P20585 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
MSH3P20585 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
MSH3P20585 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
MSH3P20585 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
MSH3P20585 RPL30-202ENST00000396070 440 ntTSL 2 BASIC16.11■□□□□ 0.17
MSH3P20585 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
MSH3P20585 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
MSH3P20585 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC16.11■□□□□ 0.17
MSH3P20585 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC16.11■□□□□ 0.17
MSH3P20585 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
MSH3P20585 RARRES2P9-201ENST00000565168 469 ntBASIC16.11■□□□□ 0.17
MSH3P20585 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
MSH3P20585 LINC00628-201ENST00000628516 1289 ntBASIC16.11■□□□□ 0.17
MSH3P20585 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC16.11■□□□□ 0.17
MSH3P20585 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
MSH3P20585 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC16.11■□□□□ 0.17
MSH3P20585 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC16.11■□□□□ 0.17
MSH3P20585 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
MSH3P20585 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
MSH3P20585 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
MSH3P20585 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
MSH3P20585 AC068418.2-201ENST00000577309 3703 ntBASIC16.11■□□□□ 0.17
MSH3P20585 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
MSH3P20585 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
MSH3P20585 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
MSH3P20585 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC16.11■□□□□ 0.17
MSH3P20585 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
MSH3P20585 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
MSH3P20585 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
MSH3P20585 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC16.11■□□□□ 0.17
MSH3P20585 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
MSH3P20585 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC16.1■□□□□ 0.17
MSH3P20585 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
MSH3P20585 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC16.1■□□□□ 0.17
MSH3P20585 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
MSH3P20585 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
MSH3P20585 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
MSH3P20585 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
MSH3P20585 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC16.1■□□□□ 0.17
MSH3P20585 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC16.1■□□□□ 0.17
MSH3P20585 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
MSH3P20585 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC16.1■□□□□ 0.17
MSH3P20585 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
MSH3P20585 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
MSH3P20585 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC16.1■□□□□ 0.17
MSH3P20585 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
MSH3P20585 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC16.1■□□□□ 0.17
MSH3P20585 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
MSH3P20585 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
MSH3P20585 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
MSH3P20585 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
MSH3P20585 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC16.1■□□□□ 0.17
MSH3P20585 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC16.1■□□□□ 0.17
MSH3P20585 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC16.1■□□□□ 0.17
MSH3P20585 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
MSH3P20585 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
MSH3P20585 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC16.1■□□□□ 0.17
MSH3P20585 GPS2P2-201ENST00000430745 888 ntBASIC16.1■□□□□ 0.17
MSH3P20585 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
MSH3P20585 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC16.1■□□□□ 0.17
MSH3P20585 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC16.1■□□□□ 0.17
MSH3P20585 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
MSH3P20585 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC16.1■□□□□ 0.17
MSH3P20585 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC16.1■□□□□ 0.17
MSH3P20585 AC004449.1-201ENST00000564240 433 ntBASIC16.1■□□□□ 0.17
MSH3P20585 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC16.1■□□□□ 0.17
MSH3P20585 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC16.1■□□□□ 0.17
MSH3P20585 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC16.1■□□□□ 0.17
MSH3P20585 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
MSH3P20585 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
MSH3P20585 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC16.1■□□□□ 0.17
MSH3P20585 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
MSH3P20585 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
MSH3P20585 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
MSH3P20585 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
MSH3P20585 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
MSH3P20585 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
MSH3P20585 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
MSH3P20585 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC16.1■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms