Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC16.2■□□□□ 0.18
SHOX2O60902 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC16.2■□□□□ 0.18
SHOX2O60902 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SHOX2O60902 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
SHOX2O60902 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SHOX2O60902 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SHOX2O60902 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
SHOX2O60902 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC16.19■□□□□ 0.18
SHOX2O60902 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC16.19■□□□□ 0.18
SHOX2O60902 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SHOX2O60902 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
SHOX2O60902 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC16.19■□□□□ 0.18
SHOX2O60902 DGCR9-201ENST00000609630 2415 ntBASIC16.19■□□□□ 0.18
SHOX2O60902 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SHOX2O60902 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SHOX2O60902 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SHOX2O60902 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC16.19■□□□□ 0.18
SHOX2O60902 ING5-213ENST00000636051 4199 ntTSL 5 BASIC16.19■□□□□ 0.18
SHOX2O60902 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SHOX2O60902 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC16.19■□□□□ 0.18
SHOX2O60902 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC16.19■□□□□ 0.18
SHOX2O60902 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
SHOX2O60902 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SHOX2O60902 LGALS8-AS1-201ENST00000487567 1457 ntBASIC16.19■□□□□ 0.18
SHOX2O60902 AC117947.1-201ENST00000427448 529 ntBASIC16.19■□□□□ 0.18
SHOX2O60902 AL359075.1-203ENST00000462729 1002 ntBASIC16.19■□□□□ 0.18
SHOX2O60902 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC16.19■□□□□ 0.18
SHOX2O60902 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SHOX2O60902 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SHOX2O60902 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
SHOX2O60902 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SHOX2O60902 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
SHOX2O60902 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SHOX2O60902 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SHOX2O60902 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SHOX2O60902 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC16.19■□□□□ 0.18
SHOX2O60902 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC16.19■□□□□ 0.18
SHOX2O60902 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SHOX2O60902 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC16.19■□□□□ 0.18
SHOX2O60902 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC16.19■□□□□ 0.18
SHOX2O60902 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC16.19■□□□□ 0.18
SHOX2O60902 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC16.19■□□□□ 0.18
SHOX2O60902 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SHOX2O60902 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SHOX2O60902 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SHOX2O60902 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SHOX2O60902 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SHOX2O60902 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SHOX2O60902 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
SHOX2O60902 ILF3-AS1-201ENST00000591501 1983 ntBASIC16.18■□□□□ 0.18
SHOX2O60902 DBN1-203ENST00000393565 2701 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
SHOX2O60902 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
SHOX2O60902 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
SHOX2O60902 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
SHOX2O60902 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC16.18■□□□□ 0.18
SHOX2O60902 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SHOX2O60902 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC16.18■□□□□ 0.18
SHOX2O60902 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SHOX2O60902 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC16.18■□□□□ 0.18
SHOX2O60902 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
SHOX2O60902 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SHOX2O60902 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SHOX2O60902 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC16.18■□□□□ 0.18
SHOX2O60902 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SHOX2O60902 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC16.18■□□□□ 0.18
SHOX2O60902 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SHOX2O60902 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SHOX2O60902 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
SHOX2O60902 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SHOX2O60902 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SHOX2O60902 AL020989.1-201ENST00000422979 469 ntBASIC16.18■□□□□ 0.18
SHOX2O60902 AL137013.1-201ENST00000432946 1228 ntBASIC16.18■□□□□ 0.18
SHOX2O60902 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
SHOX2O60902 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC16.18■□□□□ 0.18
SHOX2O60902 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC16.18■□□□□ 0.18
SHOX2O60902 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC16.18■□□□□ 0.18
SHOX2O60902 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
SHOX2O60902 AC092634.8-201ENST00000639687 773 ntTSL 5 BASIC16.18■□□□□ 0.18
SHOX2O60902 SPRY2-201ENST00000377102 2708 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SHOX2O60902 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC16.18■□□□□ 0.18
SHOX2O60902 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
SHOX2O60902 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SHOX2O60902 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SHOX2O60902 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
SHOX2O60902 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SHOX2O60902 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
SHOX2O60902 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
SHOX2O60902 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
SHOX2O60902 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SHOX2O60902 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SHOX2O60902 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SHOX2O60902 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC16.18■□□□□ 0.18
SHOX2O60902 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SHOX2O60902 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SHOX2O60902 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SHOX2O60902 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
SHOX2O60902 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC16.17■□□□□ 0.18
SHOX2O60902 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC16.17■□□□□ 0.18
SHOX2O60902 CDH16-209ENST00000570262 2604 ntTSL 5 BASIC16.17■□□□□ 0.18
SHOX2O60902 THTPA-201ENST00000288014 2860 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms