Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
CCDC39Q9UFE4 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC18.8■□□□□ 0.6
CCDC39Q9UFE4 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC18.8■□□□□ 0.6
CCDC39Q9UFE4 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC39Q9UFE4 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC18.8■□□□□ 0.6
CCDC39Q9UFE4 GGT4P-201ENST00000623672 1708 ntBASIC18.8■□□□□ 0.6
CCDC39Q9UFE4 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC39Q9UFE4 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC39Q9UFE4 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC39Q9UFE4 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC18.79■□□□□ 0.6
CCDC39Q9UFE4 GGT3P-204ENST00000453783 1664 ntBASIC18.79■□□□□ 0.6
CCDC39Q9UFE4 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
CCDC39Q9UFE4 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC18.79■□□□□ 0.6
CCDC39Q9UFE4 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC39Q9UFE4 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC39Q9UFE4 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC39Q9UFE4 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC18.79■□□□□ 0.6
CCDC39Q9UFE4 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC18.79■□□□□ 0.6
CCDC39Q9UFE4 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC39Q9UFE4 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
CCDC39Q9UFE4 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC18.79■□□□□ 0.6
CCDC39Q9UFE4 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC39Q9UFE4 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC18.79■□□□□ 0.6
CCDC39Q9UFE4 VN2R19P-201ENST00000442399 1052 ntBASIC18.79■□□□□ 0.6
CCDC39Q9UFE4 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC18.79■□□□□ 0.6
CCDC39Q9UFE4 MIR4515-201ENST00000584082 81 ntBASIC18.79■□□□□ 0.6
CCDC39Q9UFE4 ACTL9-202ENST00000612068 1252 ntBASIC18.79■□□□□ 0.6
CCDC39Q9UFE4 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC39Q9UFE4 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC18.79■□□□□ 0.6
CCDC39Q9UFE4 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC18.79■□□□□ 0.6
CCDC39Q9UFE4 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC39Q9UFE4 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC39Q9UFE4 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC18.79■□□□□ 0.6
CCDC39Q9UFE4 AC006449.6-201ENST00000612330 2296 ntBASIC18.79■□□□□ 0.6
CCDC39Q9UFE4 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC39Q9UFE4 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
CCDC39Q9UFE4 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC18.79■□□□□ 0.6
CCDC39Q9UFE4 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC18.78■□□□□ 0.6
CCDC39Q9UFE4 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC18.78■□□□□ 0.6
CCDC39Q9UFE4 AL031731.1-201ENST00000642131 2094 ntBASIC18.78■□□□□ 0.6
CCDC39Q9UFE4 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC18.78■□□□□ 0.6
CCDC39Q9UFE4 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC18.78■□□□□ 0.6
CCDC39Q9UFE4 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC39Q9UFE4 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC39Q9UFE4 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC39Q9UFE4 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC39Q9UFE4 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC39Q9UFE4 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC39Q9UFE4 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC39Q9UFE4 SLC9A3P2-201ENST00000447821 2021 ntBASIC18.78■□□□□ 0.6
CCDC39Q9UFE4 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC39Q9UFE4 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC39Q9UFE4 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC39Q9UFE4 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC18.78■□□□□ 0.6
CCDC39Q9UFE4 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC39Q9UFE4 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC39Q9UFE4 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC39Q9UFE4 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC18.78■□□□□ 0.6
CCDC39Q9UFE4 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC18.78■□□□□ 0.6
CCDC39Q9UFE4 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
CCDC39Q9UFE4 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC18.78■□□□□ 0.6
CCDC39Q9UFE4 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC18.78■□□□□ 0.6
CCDC39Q9UFE4 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC18.78■□□□□ 0.6
CCDC39Q9UFE4 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC39Q9UFE4 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC39Q9UFE4 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC39Q9UFE4 WARS-232ENST00000556645 2508 ntTSL 5 BASIC18.78■□□□□ 0.6
CCDC39Q9UFE4 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC39Q9UFE4 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC39Q9UFE4 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
CCDC39Q9UFE4 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC39Q9UFE4 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
CCDC39Q9UFE4 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC18.78■□□□□ 0.6
CCDC39Q9UFE4 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC39Q9UFE4 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC18.78■□□□□ 0.6
CCDC39Q9UFE4 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC39Q9UFE4 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC39Q9UFE4 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC39Q9UFE4 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC39Q9UFE4 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC18.77■□□□□ 0.6
CCDC39Q9UFE4 CICP13-201ENST00000422015 2789 ntBASIC18.77■□□□□ 0.6
CCDC39Q9UFE4 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC18.77■□□□□ 0.6
CCDC39Q9UFE4 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
CCDC39Q9UFE4 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC39Q9UFE4 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC39Q9UFE4 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
CCDC39Q9UFE4 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC39Q9UFE4 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
CCDC39Q9UFE4 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC39Q9UFE4 CD63-204ENST00000546939 779 ntTSL 3 BASIC18.77■□□□□ 0.6
CCDC39Q9UFE4 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC39Q9UFE4 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC39Q9UFE4 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC39Q9UFE4 AC067930.6-201ENST00000623257 4947 ntBASIC18.77■□□□□ 0.6
CCDC39Q9UFE4 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC39Q9UFE4 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC39Q9UFE4 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
CCDC39Q9UFE4 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC39Q9UFE4 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC18.77■□□□□ 0.6
CCDC39Q9UFE4 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 58.4 ms