Protein–RNA interactions for Protein: Q9NQG7

HPS4, Hermansky-Pudlak syndrome 4 protein, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4Q9NQG7 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HPS4Q9NQG7 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
HPS4Q9NQG7 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HPS4Q9NQG7 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
HPS4Q9NQG7 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC16.73■□□□□ 0.27
HPS4Q9NQG7 U91328.1-201ENST00000437528 223 ntBASIC16.73■□□□□ 0.27
HPS4Q9NQG7 AC114501.2-201ENST00000439631 535 ntBASIC16.73■□□□□ 0.27
HPS4Q9NQG7 DOC2GP-202ENST00000514950 1163 ntBASIC16.73■□□□□ 0.27
HPS4Q9NQG7 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HPS4Q9NQG7 NOP2-220ENST00000545915 630 ntTSL 2 BASIC16.73■□□□□ 0.27
HPS4Q9NQG7 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC16.73■□□□□ 0.27
HPS4Q9NQG7 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC16.73■□□□□ 0.27
HPS4Q9NQG7 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC16.73■□□□□ 0.27
HPS4Q9NQG7 CHCHD2P3-201ENST00000603038 451 ntBASIC16.73■□□□□ 0.27
HPS4Q9NQG7 AL033527.5-202ENST00000641632 1098 ntBASIC16.73■□□□□ 0.27
HPS4Q9NQG7 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC16.73■□□□□ 0.27
HPS4Q9NQG7 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HPS4Q9NQG7 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
HPS4Q9NQG7 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
HPS4Q9NQG7 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC16.73■□□□□ 0.27
HPS4Q9NQG7 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
HPS4Q9NQG7 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HPS4Q9NQG7 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
HPS4Q9NQG7 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HPS4Q9NQG7 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
HPS4Q9NQG7 AL603756.1-201ENST00000606511 2163 ntBASIC16.72■□□□□ 0.27
HPS4Q9NQG7 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
HPS4Q9NQG7 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
HPS4Q9NQG7 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC16.72■□□□□ 0.27
HPS4Q9NQG7 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC16.72■□□□□ 0.27
HPS4Q9NQG7 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
HPS4Q9NQG7 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
HPS4Q9NQG7 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC16.72■□□□□ 0.27
HPS4Q9NQG7 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC16.72■□□□□ 0.27
HPS4Q9NQG7 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HPS4Q9NQG7 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HPS4Q9NQG7 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HPS4Q9NQG7 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
HPS4Q9NQG7 AMT-206ENST00000458307 1860 ntTSL 2 BASIC16.72■□□□□ 0.27
HPS4Q9NQG7 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC16.72■□□□□ 0.27
HPS4Q9NQG7 RELA-227ENST00000615805 2236 ntTSL 5 BASIC16.72■□□□□ 0.27
HPS4Q9NQG7 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
HPS4Q9NQG7 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HPS4Q9NQG7 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
HPS4Q9NQG7 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC16.72■□□□□ 0.27
HPS4Q9NQG7 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC16.72■□□□□ 0.27
HPS4Q9NQG7 AC007274.1-201ENST00000439805 662 ntBASIC16.72■□□□□ 0.27
HPS4Q9NQG7 SERBP1P3-201ENST00000459980 809 ntBASIC16.72■□□□□ 0.27
HPS4Q9NQG7 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
HPS4Q9NQG7 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC16.72■□□□□ 0.27
HPS4Q9NQG7 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC16.72■□□□□ 0.27
HPS4Q9NQG7 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC16.72■□□□□ 0.27
HPS4Q9NQG7 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
HPS4Q9NQG7 WASH4P-201ENST00000564273 1246 ntBASIC16.72■□□□□ 0.27
HPS4Q9NQG7 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
HPS4Q9NQG7 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC16.72■□□□□ 0.27
HPS4Q9NQG7 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HPS4Q9NQG7 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HPS4Q9NQG7 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC16.72■□□□□ 0.27
HPS4Q9NQG7 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
HPS4Q9NQG7 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
HPS4Q9NQG7 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC16.72■□□□□ 0.27
HPS4Q9NQG7 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
HPS4Q9NQG7 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
HPS4Q9NQG7 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
HPS4Q9NQG7 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
HPS4Q9NQG7 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
HPS4Q9NQG7 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HPS4Q9NQG7 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HPS4Q9NQG7 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
HPS4Q9NQG7 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HPS4Q9NQG7 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
HPS4Q9NQG7 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
HPS4Q9NQG7 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
HPS4Q9NQG7 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
HPS4Q9NQG7 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC16.71■□□□□ 0.27
HPS4Q9NQG7 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HPS4Q9NQG7 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC16.71■□□□□ 0.27
HPS4Q9NQG7 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HPS4Q9NQG7 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC16.71■□□□□ 0.27
HPS4Q9NQG7 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HPS4Q9NQG7 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
HPS4Q9NQG7 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HPS4Q9NQG7 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HPS4Q9NQG7 AC098614.1-201ENST00000368528 745 ntBASIC16.71■□□□□ 0.27
HPS4Q9NQG7 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
HPS4Q9NQG7 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC16.71■□□□□ 0.27
HPS4Q9NQG7 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC16.71■□□□□ 0.27
HPS4Q9NQG7 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
HPS4Q9NQG7 AC026979.3-201ENST00000607315 403 ntBASIC16.71■□□□□ 0.27
HPS4Q9NQG7 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC16.71■□□□□ 0.27
HPS4Q9NQG7 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC16.71■□□□□ 0.27
HPS4Q9NQG7 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
HPS4Q9NQG7 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC16.71■□□□□ 0.27
HPS4Q9NQG7 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HPS4Q9NQG7 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC16.71■□□□□ 0.27
HPS4Q9NQG7 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
HPS4Q9NQG7 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
HPS4Q9NQG7 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HPS4Q9NQG7 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms