Protein–RNA interactions for Protein: Q9H422

HIPK3, Homeodomain-interacting protein kinase 3, humanhuman

Predictions only

Length 1,215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIPK3Q9H422 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC17.55■□□□□ 0.4
HIPK3Q9H422 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC17.55■□□□□ 0.4
HIPK3Q9H422 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
HIPK3Q9H422 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HIPK3Q9H422 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HIPK3Q9H422 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HIPK3Q9H422 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
HIPK3Q9H422 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HIPK3Q9H422 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
HIPK3Q9H422 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HIPK3Q9H422 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
HIPK3Q9H422 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HIPK3Q9H422 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HIPK3Q9H422 AC004987.2-201ENST00000395959 1148 ntBASIC17.55■□□□□ 0.4
HIPK3Q9H422 AZGP1P1-201ENST00000411909 902 ntBASIC17.55■□□□□ 0.4
HIPK3Q9H422 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC17.55■□□□□ 0.4
HIPK3Q9H422 AL355864.2-201ENST00000447420 863 ntBASIC17.55■□□□□ 0.4
HIPK3Q9H422 PFN1P12-201ENST00000455938 534 ntBASIC17.55■□□□□ 0.4
HIPK3Q9H422 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC17.55■□□□□ 0.4
HIPK3Q9H422 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HIPK3Q9H422 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC17.55■□□□□ 0.4
HIPK3Q9H422 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC17.55■□□□□ 0.4
HIPK3Q9H422 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC17.55■□□□□ 0.4
HIPK3Q9H422 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC17.55■□□□□ 0.4
HIPK3Q9H422 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC17.55■□□□□ 0.4
HIPK3Q9H422 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC17.55■□□□□ 0.4
HIPK3Q9H422 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC17.55■□□□□ 0.4
HIPK3Q9H422 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HIPK3Q9H422 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
HIPK3Q9H422 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HIPK3Q9H422 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HIPK3Q9H422 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC17.55■□□□□ 0.4
HIPK3Q9H422 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
HIPK3Q9H422 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HIPK3Q9H422 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC17.55■□□□□ 0.4
HIPK3Q9H422 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC17.55■□□□□ 0.4
HIPK3Q9H422 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
HIPK3Q9H422 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HIPK3Q9H422 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
HIPK3Q9H422 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
HIPK3Q9H422 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HIPK3Q9H422 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
HIPK3Q9H422 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC17.54■□□□□ 0.4
HIPK3Q9H422 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
HIPK3Q9H422 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
HIPK3Q9H422 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
HIPK3Q9H422 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC17.54■□□□□ 0.4
HIPK3Q9H422 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HIPK3Q9H422 PP12613-201ENST00000424958 2230 ntBASIC17.54■□□□□ 0.4
HIPK3Q9H422 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
HIPK3Q9H422 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HIPK3Q9H422 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
HIPK3Q9H422 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HIPK3Q9H422 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
HIPK3Q9H422 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
HIPK3Q9H422 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HIPK3Q9H422 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC17.54■□□□□ 0.4
HIPK3Q9H422 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC17.54■□□□□ 0.4
HIPK3Q9H422 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
HIPK3Q9H422 SOCS2P1-201ENST00000417727 557 ntBASIC17.54■□□□□ 0.4
HIPK3Q9H422 AC134915.1-201ENST00000426461 574 ntBASIC17.54■□□□□ 0.4
HIPK3Q9H422 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC17.54■□□□□ 0.4
HIPK3Q9H422 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC17.54■□□□□ 0.4
HIPK3Q9H422 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC17.54■□□□□ 0.4
HIPK3Q9H422 AP000812.2-201ENST00000538934 718 ntBASIC17.54■□□□□ 0.4
HIPK3Q9H422 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC17.54■□□□□ 0.4
HIPK3Q9H422 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
HIPK3Q9H422 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC17.54■□□□□ 0.4
HIPK3Q9H422 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
HIPK3Q9H422 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
HIPK3Q9H422 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC17.54■□□□□ 0.4
HIPK3Q9H422 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC17.54■□□□□ 0.4
HIPK3Q9H422 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HIPK3Q9H422 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC17.54■□□□□ 0.4
HIPK3Q9H422 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC17.54■□□□□ 0.4
HIPK3Q9H422 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
HIPK3Q9H422 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HIPK3Q9H422 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
HIPK3Q9H422 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC17.54■□□□□ 0.4
HIPK3Q9H422 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
HIPK3Q9H422 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HIPK3Q9H422 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
HIPK3Q9H422 TP73-213ENST00000604479 1623 ntTSL 5 BASIC17.54■□□□□ 0.4
HIPK3Q9H422 LOX-206ENST00000639739 1626 ntTSL 5 BASIC17.54■□□□□ 0.4
HIPK3Q9H422 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC17.54■□□□□ 0.4
HIPK3Q9H422 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
HIPK3Q9H422 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC17.53■□□□□ 0.4
HIPK3Q9H422 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC17.53■□□□□ 0.4
HIPK3Q9H422 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC17.53■□□□□ 0.4
HIPK3Q9H422 RERG-209ENST00000546331 1383 ntTSL 2 BASIC17.53■□□□□ 0.4
HIPK3Q9H422 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HIPK3Q9H422 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HIPK3Q9H422 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC17.53■□□□□ 0.4
HIPK3Q9H422 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC17.53■□□□□ 0.4
HIPK3Q9H422 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HIPK3Q9H422 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
HIPK3Q9H422 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC17.53■□□□□ 0.4
HIPK3Q9H422 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
HIPK3Q9H422 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
HIPK3Q9H422 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms