Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
ATG4AQ8WYN0 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
ATG4AQ8WYN0 AQP6-205ENST00000618286 829 ntTSL 5 BASIC16.8■□□□□ 0.28
ATG4AQ8WYN0 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC16.8■□□□□ 0.28
ATG4AQ8WYN0 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
ATG4AQ8WYN0 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC16.8■□□□□ 0.28
ATG4AQ8WYN0 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
ATG4AQ8WYN0 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
ATG4AQ8WYN0 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
ATG4AQ8WYN0 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
ATG4AQ8WYN0 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
ATG4AQ8WYN0 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
ATG4AQ8WYN0 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC16.8■□□□□ 0.28
ATG4AQ8WYN0 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
ATG4AQ8WYN0 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
ATG4AQ8WYN0 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC16.8■□□□□ 0.28
ATG4AQ8WYN0 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC16.8■□□□□ 0.28
ATG4AQ8WYN0 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC16.8■□□□□ 0.28
ATG4AQ8WYN0 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
ATG4AQ8WYN0 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
ATG4AQ8WYN0 AC025580.3-201ENST00000617932 1424 ntBASIC16.79■□□□□ 0.28
ATG4AQ8WYN0 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC16.79■□□□□ 0.28
ATG4AQ8WYN0 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
ATG4AQ8WYN0 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
ATG4AQ8WYN0 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
ATG4AQ8WYN0 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC16.79■□□□□ 0.28
ATG4AQ8WYN0 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
ATG4AQ8WYN0 GSN-206ENST00000394353 2311 ntTSL 2 BASIC16.79■□□□□ 0.28
ATG4AQ8WYN0 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
ATG4AQ8WYN0 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
ATG4AQ8WYN0 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ATG4AQ8WYN0 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
ATG4AQ8WYN0 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ATG4AQ8WYN0 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC16.79■□□□□ 0.28
ATG4AQ8WYN0 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC16.79■□□□□ 0.28
ATG4AQ8WYN0 FIS1-203ENST00000442303 631 ntTSL 3 BASIC16.79■□□□□ 0.28
ATG4AQ8WYN0 AC009078.2-202ENST00000463353 338 ntBASIC16.79■□□□□ 0.28
ATG4AQ8WYN0 HS6ST1P1-201ENST00000481504 1234 ntBASIC16.79■□□□□ 0.28
ATG4AQ8WYN0 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
ATG4AQ8WYN0 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC16.79■□□□□ 0.28
ATG4AQ8WYN0 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC16.79■□□□□ 0.28
ATG4AQ8WYN0 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
ATG4AQ8WYN0 QPRT-203ENST00000562473 579 ntTSL 3 BASIC16.79■□□□□ 0.28
ATG4AQ8WYN0 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
ATG4AQ8WYN0 AC023141.13-201ENST00000604991 943 ntBASIC16.79■□□□□ 0.28
ATG4AQ8WYN0 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC16.79■□□□□ 0.28
ATG4AQ8WYN0 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC16.79■□□□□ 0.28
ATG4AQ8WYN0 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
ATG4AQ8WYN0 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
ATG4AQ8WYN0 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ATG4AQ8WYN0 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ATG4AQ8WYN0 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC16.79■□□□□ 0.28
ATG4AQ8WYN0 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC16.79■□□□□ 0.28
ATG4AQ8WYN0 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ATG4AQ8WYN0 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC16.79■□□□□ 0.28
ATG4AQ8WYN0 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
ATG4AQ8WYN0 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
ATG4AQ8WYN0 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
ATG4AQ8WYN0 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC16.78■□□□□ 0.28
ATG4AQ8WYN0 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
ATG4AQ8WYN0 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
ATG4AQ8WYN0 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
ATG4AQ8WYN0 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC16.78■□□□□ 0.28
ATG4AQ8WYN0 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ATG4AQ8WYN0 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ATG4AQ8WYN0 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC16.78■□□□□ 0.28
ATG4AQ8WYN0 BCAR1-209ENST00000546196 1340 ntBASIC16.78■□□□□ 0.28
ATG4AQ8WYN0 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC16.78■□□□□ 0.28
ATG4AQ8WYN0 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
ATG4AQ8WYN0 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ATG4AQ8WYN0 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
ATG4AQ8WYN0 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC16.78■□□□□ 0.28
ATG4AQ8WYN0 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC16.78■□□□□ 0.28
ATG4AQ8WYN0 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
ATG4AQ8WYN0 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
ATG4AQ8WYN0 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
ATG4AQ8WYN0 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
ATG4AQ8WYN0 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
ATG4AQ8WYN0 AC093909.1-201ENST00000504731 1122 ntBASIC16.78■□□□□ 0.28
ATG4AQ8WYN0 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC16.78■□□□□ 0.28
ATG4AQ8WYN0 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC16.78■□□□□ 0.28
ATG4AQ8WYN0 CD63-204ENST00000546939 779 ntTSL 3 BASIC16.78■□□□□ 0.28
ATG4AQ8WYN0 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC16.78■□□□□ 0.28
ATG4AQ8WYN0 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
ATG4AQ8WYN0 Z83851.2-201ENST00000609564 659 ntBASIC16.78■□□□□ 0.28
ATG4AQ8WYN0 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
ATG4AQ8WYN0 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC16.78■□□□□ 0.28
ATG4AQ8WYN0 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC16.78■□□□□ 0.28
ATG4AQ8WYN0 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC16.78■□□□□ 0.28
ATG4AQ8WYN0 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ATG4AQ8WYN0 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ATG4AQ8WYN0 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
ATG4AQ8WYN0 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
ATG4AQ8WYN0 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC16.78■□□□□ 0.28
ATG4AQ8WYN0 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ATG4AQ8WYN0 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
ATG4AQ8WYN0 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
ATG4AQ8WYN0 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
ATG4AQ8WYN0 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
ATG4AQ8WYN0 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms