Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SHROOM3Q8TF72 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SHROOM3Q8TF72 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC16.43■□□□□ 0.22
SHROOM3Q8TF72 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SHROOM3Q8TF72 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SHROOM3Q8TF72 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC16.43■□□□□ 0.22
SHROOM3Q8TF72 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
SHROOM3Q8TF72 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
SHROOM3Q8TF72 BAD-202ENST00000394531 631 ntTSL 3 BASIC16.43■□□□□ 0.22
SHROOM3Q8TF72 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC16.43■□□□□ 0.22
SHROOM3Q8TF72 HLA-DRB6-201ENST00000411500 1235 ntBASIC16.43■□□□□ 0.22
SHROOM3Q8TF72 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC16.43■□□□□ 0.22
SHROOM3Q8TF72 AC067863.1-201ENST00000494933 530 ntBASIC16.43■□□□□ 0.22
SHROOM3Q8TF72 DAD1-205ENST00000543337 501 ntTSL 3 BASIC16.43■□□□□ 0.22
SHROOM3Q8TF72 VPS29-207ENST00000549970 818 ntTSL 3 BASIC16.43■□□□□ 0.22
SHROOM3Q8TF72 RARRES2P9-201ENST00000565168 469 ntBASIC16.43■□□□□ 0.22
SHROOM3Q8TF72 AC003101.2-201ENST00000612557 442 ntBASIC16.43■□□□□ 0.22
SHROOM3Q8TF72 LINC00628-201ENST00000628516 1289 ntBASIC16.43■□□□□ 0.22
SHROOM3Q8TF72 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
SHROOM3Q8TF72 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
SHROOM3Q8TF72 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
SHROOM3Q8TF72 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC16.43■□□□□ 0.22
SHROOM3Q8TF72 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
SHROOM3Q8TF72 VILL-207ENST00000465644 1857 ntTSL 5 BASIC16.43■□□□□ 0.22
SHROOM3Q8TF72 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
SHROOM3Q8TF72 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SHROOM3Q8TF72 BNIP3P1-202ENST00000550043 1585 ntBASIC16.43■□□□□ 0.22
SHROOM3Q8TF72 CYP4F24P-201ENST00000586049 1580 ntBASIC16.43■□□□□ 0.22
SHROOM3Q8TF72 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
SHROOM3Q8TF72 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
SHROOM3Q8TF72 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
SHROOM3Q8TF72 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC16.42■□□□□ 0.22
SHROOM3Q8TF72 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
SHROOM3Q8TF72 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC16.42■□□□□ 0.22
SHROOM3Q8TF72 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC16.42■□□□□ 0.22
SHROOM3Q8TF72 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SHROOM3Q8TF72 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
SHROOM3Q8TF72 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC16.42■□□□□ 0.22
SHROOM3Q8TF72 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC16.42■□□□□ 0.22
SHROOM3Q8TF72 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SHROOM3Q8TF72 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC16.42■□□□□ 0.22
SHROOM3Q8TF72 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC16.42■□□□□ 0.22
SHROOM3Q8TF72 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SHROOM3Q8TF72 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
SHROOM3Q8TF72 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SHROOM3Q8TF72 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
SHROOM3Q8TF72 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SHROOM3Q8TF72 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SHROOM3Q8TF72 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC16.42■□□□□ 0.22
SHROOM3Q8TF72 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
SHROOM3Q8TF72 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
SHROOM3Q8TF72 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
SHROOM3Q8TF72 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SHROOM3Q8TF72 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
SHROOM3Q8TF72 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
SHROOM3Q8TF72 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
SHROOM3Q8TF72 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
SHROOM3Q8TF72 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
SHROOM3Q8TF72 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC16.42■□□□□ 0.22
SHROOM3Q8TF72 SPDYE7P-202ENST00000420373 878 ntBASIC16.42■□□□□ 0.22
SHROOM3Q8TF72 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC16.42■□□□□ 0.22
SHROOM3Q8TF72 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
SHROOM3Q8TF72 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC16.42■□□□□ 0.22
SHROOM3Q8TF72 SLC25A39P2-201ENST00000537614 270 ntBASIC16.42■□□□□ 0.22
SHROOM3Q8TF72 NOP2-220ENST00000545915 630 ntTSL 2 BASIC16.42■□□□□ 0.22
SHROOM3Q8TF72 COX11-202ENST00000571584 1108 ntTSL 2 BASIC16.42■□□□□ 0.22
SHROOM3Q8TF72 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC16.42■□□□□ 0.22
SHROOM3Q8TF72 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC16.42■□□□□ 0.22
SHROOM3Q8TF72 AC007967.4-201ENST00000614700 386 ntBASIC16.42■□□□□ 0.22
SHROOM3Q8TF72 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC16.42■□□□□ 0.22
SHROOM3Q8TF72 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC16.42■□□□□ 0.22
SHROOM3Q8TF72 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SHROOM3Q8TF72 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
SHROOM3Q8TF72 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
SHROOM3Q8TF72 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC16.42■□□□□ 0.22
SHROOM3Q8TF72 AC009090.5-201ENST00000624886 2285 ntBASIC16.42■□□□□ 0.22
SHROOM3Q8TF72 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC16.41■□□□□ 0.22
SHROOM3Q8TF72 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC16.41■□□□□ 0.22
SHROOM3Q8TF72 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SHROOM3Q8TF72 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SHROOM3Q8TF72 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
SHROOM3Q8TF72 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SHROOM3Q8TF72 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC16.41■□□□□ 0.22
SHROOM3Q8TF72 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SHROOM3Q8TF72 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SHROOM3Q8TF72 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC16.41■□□□□ 0.22
SHROOM3Q8TF72 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
SHROOM3Q8TF72 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SHROOM3Q8TF72 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SHROOM3Q8TF72 FAM86GP-201ENST00000448322 971 ntBASIC16.41■□□□□ 0.22
SHROOM3Q8TF72 PPP6R2P1-201ENST00000450880 1275 ntBASIC16.41■□□□□ 0.22
SHROOM3Q8TF72 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SHROOM3Q8TF72 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SHROOM3Q8TF72 MIR6752-201ENST00000618442 71 ntBASIC16.41■□□□□ 0.22
SHROOM3Q8TF72 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
SHROOM3Q8TF72 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SHROOM3Q8TF72 ABR-203ENST00000536794 2213 ntTSL 2 BASIC16.41■□□□□ 0.22
SHROOM3Q8TF72 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
SHROOM3Q8TF72 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC16.41■□□□□ 0.22
SHROOM3Q8TF72 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms