Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 AC126915.1-201ENST00000522847 1038 ntBASIC19.02■□□□□ 0.64
SMC1BQ8NDV3 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC19.02■□□□□ 0.64
SMC1BQ8NDV3 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC19.02■□□□□ 0.64
SMC1BQ8NDV3 AC078819.1-201ENST00000547454 765 ntBASIC19.02■□□□□ 0.64
SMC1BQ8NDV3 AC012085.1-201ENST00000548270 765 ntBASIC19.02■□□□□ 0.64
SMC1BQ8NDV3 LINC01481-204ENST00000550216 494 ntTSL 2 BASIC19.02■□□□□ 0.64
SMC1BQ8NDV3 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC19.02■□□□□ 0.64
SMC1BQ8NDV3 FGFR3P5-201ENST00000564496 886 ntBASIC19.02■□□□□ 0.64
SMC1BQ8NDV3 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC19.02■□□□□ 0.64
SMC1BQ8NDV3 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
SMC1BQ8NDV3 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
SMC1BQ8NDV3 RN7SL555P-201ENST00000584742 339 ntBASIC19.02■□□□□ 0.64
SMC1BQ8NDV3 TPGS2-209ENST00000589049 1102 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
SMC1BQ8NDV3 AC010323.1-201ENST00000598884 580 ntAPPRIS P1 TSL 4 BASIC19.02■□□□□ 0.64
SMC1BQ8NDV3 CR589904.1-202ENST00000611154 660 ntTSL 5 BASIC19.02■□□□□ 0.64
SMC1BQ8NDV3 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SMC1BQ8NDV3 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
SMC1BQ8NDV3 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SMC1BQ8NDV3 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SMC1BQ8NDV3 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SMC1BQ8NDV3 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
SMC1BQ8NDV3 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC19.02■□□□□ 0.63
SMC1BQ8NDV3 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
SMC1BQ8NDV3 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.63
SMC1BQ8NDV3 PCDHB18P-201ENST00000524813 2368 ntBASIC19.01■□□□□ 0.63
SMC1BQ8NDV3 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SMC1BQ8NDV3 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
SMC1BQ8NDV3 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SMC1BQ8NDV3 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SMC1BQ8NDV3 AL133373.2-201ENST00000623187 2828 ntBASIC19.01■□□□□ 0.63
SMC1BQ8NDV3 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC19.01■□□□□ 0.63
SMC1BQ8NDV3 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
SMC1BQ8NDV3 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SMC1BQ8NDV3 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC19.01■□□□□ 0.63
SMC1BQ8NDV3 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
SMC1BQ8NDV3 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
SMC1BQ8NDV3 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC19.01■□□□□ 0.63
SMC1BQ8NDV3 AC018735.1-201ENST00000437208 1502 ntBASIC19.01■□□□□ 0.63
SMC1BQ8NDV3 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
SMC1BQ8NDV3 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
SMC1BQ8NDV3 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SMC1BQ8NDV3 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC19.01■□□□□ 0.63
SMC1BQ8NDV3 AL137856.1-201ENST00000429398 773 ntTSL 3 BASIC19.01■□□□□ 0.63
SMC1BQ8NDV3 FAM197Y7-201ENST00000432892 766 ntBASIC19.01■□□□□ 0.63
SMC1BQ8NDV3 AC069218.1-201ENST00000435269 762 ntBASIC19.01■□□□□ 0.63
SMC1BQ8NDV3 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC19.01■□□□□ 0.63
SMC1BQ8NDV3 POM121L10P-201ENST00000436994 1285 ntBASIC19.01■□□□□ 0.63
SMC1BQ8NDV3 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SMC1BQ8NDV3 AC093151.3-202ENST00000445073 709 ntTSL 3 BASIC19.01■□□□□ 0.63
SMC1BQ8NDV3 VDAC1P7-201ENST00000462417 847 ntBASIC19.01■□□□□ 0.63
SMC1BQ8NDV3 SUPT4H1P2-201ENST00000501248 353 ntBASIC19.01■□□□□ 0.63
SMC1BQ8NDV3 EIF3K-202ENST00000538434 966 ntTSL 2 BASIC19.01■□□□□ 0.63
SMC1BQ8NDV3 SRSF3-208ENST00000620941 869 ntAPPRIS P1 TSL 3 BASIC19.01■□□□□ 0.63
SMC1BQ8NDV3 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
SMC1BQ8NDV3 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SMC1BQ8NDV3 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC19.01■□□□□ 0.63
SMC1BQ8NDV3 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SMC1BQ8NDV3 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SMC1BQ8NDV3 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SMC1BQ8NDV3 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SMC1BQ8NDV3 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SMC1BQ8NDV3 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
SMC1BQ8NDV3 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SMC1BQ8NDV3 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC19■□□□□ 0.63
SMC1BQ8NDV3 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC19■□□□□ 0.63
SMC1BQ8NDV3 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SMC1BQ8NDV3 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
SMC1BQ8NDV3 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC19■□□□□ 0.63
SMC1BQ8NDV3 THOC6-201ENST00000253952 1246 ntTSL 2 BASIC19■□□□□ 0.63
SMC1BQ8NDV3 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SMC1BQ8NDV3 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC19■□□□□ 0.63
SMC1BQ8NDV3 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC19■□□□□ 0.63
SMC1BQ8NDV3 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC19■□□□□ 0.63
SMC1BQ8NDV3 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC19■□□□□ 0.63
SMC1BQ8NDV3 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC19■□□□□ 0.63
SMC1BQ8NDV3 AL136088.1-202ENST00000525871 439 ntTSL 2 BASIC19■□□□□ 0.63
SMC1BQ8NDV3 AC138649.2-201ENST00000615886 705 ntBASIC19■□□□□ 0.63
SMC1BQ8NDV3 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC19■□□□□ 0.63
SMC1BQ8NDV3 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC19■□□□□ 0.63
SMC1BQ8NDV3 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
SMC1BQ8NDV3 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
SMC1BQ8NDV3 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC19■□□□□ 0.63
SMC1BQ8NDV3 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC19■□□□□ 0.63
SMC1BQ8NDV3 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
SMC1BQ8NDV3 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SMC1BQ8NDV3 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC19■□□□□ 0.63
SMC1BQ8NDV3 AC006277.1-201ENST00000624348 1610 ntBASIC19■□□□□ 0.63
SMC1BQ8NDV3 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SMC1BQ8NDV3 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
SMC1BQ8NDV3 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
SMC1BQ8NDV3 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SMC1BQ8NDV3 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
SMC1BQ8NDV3 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
SMC1BQ8NDV3 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SMC1BQ8NDV3 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SMC1BQ8NDV3 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC18.99■□□□□ 0.63
SMC1BQ8NDV3 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SMC1BQ8NDV3 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SMC1BQ8NDV3 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC18.99■□□□□ 0.63
SMC1BQ8NDV3 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms