Protein–RNA interactions for Protein: Q8IVM0

CCDC50, Coiled-coil domain-containing protein 50, humanhuman

Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC50Q8IVM0 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
CCDC50Q8IVM0 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CCDC50Q8IVM0 AP003680.1-201ENST00000598970 3660 ntBASIC17.17■□□□□ 0.34
CCDC50Q8IVM0 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC17.17■□□□□ 0.34
CCDC50Q8IVM0 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CCDC50Q8IVM0 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC17.17■□□□□ 0.34
CCDC50Q8IVM0 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
CCDC50Q8IVM0 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CCDC50Q8IVM0 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CCDC50Q8IVM0 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CCDC50Q8IVM0 GOLGA8DP-202ENST00000341390 2184 ntBASIC17.17■□□□□ 0.34
CCDC50Q8IVM0 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CCDC50Q8IVM0 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CCDC50Q8IVM0 CD99-202ENST00000381180 530 ntTSL 2 BASIC17.17■□□□□ 0.34
CCDC50Q8IVM0 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CCDC50Q8IVM0 AC098831.1-202ENST00000438821 336 ntBASIC17.17■□□□□ 0.34
CCDC50Q8IVM0 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CCDC50Q8IVM0 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC17.17■□□□□ 0.34
CCDC50Q8IVM0 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC17.17■□□□□ 0.34
CCDC50Q8IVM0 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC17.17■□□□□ 0.34
CCDC50Q8IVM0 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CCDC50Q8IVM0 CALM3-211ENST00000598871 561 ntTSL 4 BASIC17.17■□□□□ 0.34
CCDC50Q8IVM0 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC17.17■□□□□ 0.34
CCDC50Q8IVM0 PRKN-208ENST00000610470 531 ntTSL 2 BASIC17.17■□□□□ 0.34
CCDC50Q8IVM0 PRKN-209ENST00000612485 225 ntTSL 5 BASIC17.17■□□□□ 0.34
CCDC50Q8IVM0 MIR7706-201ENST00000613747 67 ntBASIC17.17■□□□□ 0.34
CCDC50Q8IVM0 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
CCDC50Q8IVM0 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CCDC50Q8IVM0 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CCDC50Q8IVM0 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC17.17■□□□□ 0.34
CCDC50Q8IVM0 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
CCDC50Q8IVM0 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CCDC50Q8IVM0 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CCDC50Q8IVM0 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC17.17■□□□□ 0.34
CCDC50Q8IVM0 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CCDC50Q8IVM0 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
CCDC50Q8IVM0 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC17.16■□□□□ 0.34
CCDC50Q8IVM0 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC17.16■□□□□ 0.34
CCDC50Q8IVM0 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CCDC50Q8IVM0 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC17.16■□□□□ 0.34
CCDC50Q8IVM0 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
CCDC50Q8IVM0 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC17.16■□□□□ 0.34
CCDC50Q8IVM0 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CCDC50Q8IVM0 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
CCDC50Q8IVM0 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC17.16■□□□□ 0.34
CCDC50Q8IVM0 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC17.16■□□□□ 0.34
CCDC50Q8IVM0 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CCDC50Q8IVM0 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC17.16■□□□□ 0.34
CCDC50Q8IVM0 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CCDC50Q8IVM0 HMGA1P7-201ENST00000406908 502 ntBASIC17.16■□□□□ 0.34
CCDC50Q8IVM0 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CCDC50Q8IVM0 AL031284.1-201ENST00000419297 478 ntBASIC17.16■□□□□ 0.34
CCDC50Q8IVM0 PRSS29P-201ENST00000440800 595 ntBASIC17.16■□□□□ 0.34
CCDC50Q8IVM0 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CCDC50Q8IVM0 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CCDC50Q8IVM0 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC17.16■□□□□ 0.34
CCDC50Q8IVM0 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC17.16■□□□□ 0.34
CCDC50Q8IVM0 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC17.16■□□□□ 0.34
CCDC50Q8IVM0 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CCDC50Q8IVM0 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC17.16■□□□□ 0.34
CCDC50Q8IVM0 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CCDC50Q8IVM0 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC17.16■□□□□ 0.34
CCDC50Q8IVM0 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CCDC50Q8IVM0 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC17.16■□□□□ 0.34
CCDC50Q8IVM0 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
CCDC50Q8IVM0 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC17.15■□□□□ 0.34
CCDC50Q8IVM0 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC17.15■□□□□ 0.34
CCDC50Q8IVM0 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC17.15■□□□□ 0.34
CCDC50Q8IVM0 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
CCDC50Q8IVM0 LINC02447-202ENST00000501888 2146 ntBASIC17.15■□□□□ 0.34
CCDC50Q8IVM0 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CCDC50Q8IVM0 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
CCDC50Q8IVM0 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC17.15■□□□□ 0.34
CCDC50Q8IVM0 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CCDC50Q8IVM0 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CCDC50Q8IVM0 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CCDC50Q8IVM0 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
CCDC50Q8IVM0 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC17.15■□□□□ 0.34
CCDC50Q8IVM0 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
CCDC50Q8IVM0 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
CCDC50Q8IVM0 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
CCDC50Q8IVM0 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC17.15■□□□□ 0.34
CCDC50Q8IVM0 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC17.15■□□□□ 0.34
CCDC50Q8IVM0 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CCDC50Q8IVM0 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC17.15■□□□□ 0.34
CCDC50Q8IVM0 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
CCDC50Q8IVM0 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC17.15■□□□□ 0.34
CCDC50Q8IVM0 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC17.15■□□□□ 0.34
CCDC50Q8IVM0 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CCDC50Q8IVM0 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC17.15■□□□□ 0.34
CCDC50Q8IVM0 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
CCDC50Q8IVM0 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC17.15■□□□□ 0.34
CCDC50Q8IVM0 AL031432.2-201ENST00000566714 459 ntBASIC17.15■□□□□ 0.34
CCDC50Q8IVM0 AL928711.1-201ENST00000570165 459 ntBASIC17.15■□□□□ 0.34
CCDC50Q8IVM0 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
CCDC50Q8IVM0 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
CCDC50Q8IVM0 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CCDC50Q8IVM0 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CCDC50Q8IVM0 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC17.15■□□□□ 0.34
CCDC50Q8IVM0 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms