Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
LMO4P61968 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
LMO4P61968 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC13.19□□□□□ -0.3
LMO4P61968 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
LMO4P61968 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
LMO4P61968 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC13.19□□□□□ -0.3
LMO4P61968 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
LMO4P61968 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
LMO4P61968 CA12-203ENST00000422263 2556 ntTSL 2 BASIC13.19□□□□□ -0.3
LMO4P61968 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC13.19□□□□□ -0.3
LMO4P61968 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
LMO4P61968 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
LMO4P61968 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC13.19□□□□□ -0.3
LMO4P61968 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
LMO4P61968 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
LMO4P61968 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC13.18□□□□□ -0.3
LMO4P61968 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
LMO4P61968 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
LMO4P61968 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC13.18□□□□□ -0.3
LMO4P61968 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
LMO4P61968 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC13.18□□□□□ -0.3
LMO4P61968 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
LMO4P61968 AC134407.2-201ENST00000625089 1978 ntBASIC13.18□□□□□ -0.3
LMO4P61968 CLK3P2-201ENST00000427566 1453 ntBASIC13.18□□□□□ -0.3
LMO4P61968 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
LMO4P61968 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
LMO4P61968 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
LMO4P61968 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
LMO4P61968 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
LMO4P61968 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
LMO4P61968 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
LMO4P61968 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
LMO4P61968 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC13.18□□□□□ -0.3
LMO4P61968 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC13.18□□□□□ -0.3
LMO4P61968 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC13.18□□□□□ -0.3
LMO4P61968 MXI1-205ENST00000393134 889 ntTSL 2 BASIC13.18□□□□□ -0.3
LMO4P61968 PGF-202ENST00000405431 666 ntTSL 5 BASIC13.18□□□□□ -0.3
LMO4P61968 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC13.18□□□□□ -0.3
LMO4P61968 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC13.18□□□□□ -0.3
LMO4P61968 ATP5G2P4-201ENST00000442175 420 ntBASIC13.18□□□□□ -0.3
LMO4P61968 GPR53P-205ENST00000457298 1084 ntBASIC13.18□□□□□ -0.3
LMO4P61968 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC13.18□□□□□ -0.3
LMO4P61968 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
LMO4P61968 NEU3-203ENST00000529024 581 ntTSL 3 BASIC13.18□□□□□ -0.3
LMO4P61968 AC092552.1-201ENST00000547243 906 ntBASIC13.18□□□□□ -0.3
LMO4P61968 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC13.18□□□□□ -0.3
LMO4P61968 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC13.18□□□□□ -0.3
LMO4P61968 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC13.18□□□□□ -0.3
LMO4P61968 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
LMO4P61968 AL162274.1-201ENST00000617191 1098 ntBASIC13.18□□□□□ -0.3
LMO4P61968 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
LMO4P61968 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC13.18□□□□□ -0.3
LMO4P61968 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
LMO4P61968 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC13.18□□□□□ -0.3
LMO4P61968 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
LMO4P61968 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
LMO4P61968 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
LMO4P61968 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
LMO4P61968 OR6D1P-203ENST00000641209 4860 ntBASIC13.18□□□□□ -0.3
LMO4P61968 CDC14C-201ENST00000428251 1719 ntBASIC13.18□□□□□ -0.3
LMO4P61968 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
LMO4P61968 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
LMO4P61968 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
LMO4P61968 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC13.18□□□□□ -0.3
LMO4P61968 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC13.17□□□□□ -0.3
LMO4P61968 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
LMO4P61968 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC13.17□□□□□ -0.3
LMO4P61968 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC13.17□□□□□ -0.3
LMO4P61968 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
LMO4P61968 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
LMO4P61968 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC13.17□□□□□ -0.3
LMO4P61968 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
LMO4P61968 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
LMO4P61968 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
LMO4P61968 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC13.17□□□□□ -0.3
LMO4P61968 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
LMO4P61968 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
LMO4P61968 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
LMO4P61968 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
LMO4P61968 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC13.17□□□□□ -0.3
LMO4P61968 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
LMO4P61968 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC13.17□□□□□ -0.3
LMO4P61968 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC13.17□□□□□ -0.3
LMO4P61968 GALT-202ENST00000450095 1280 ntTSL 2 BASIC13.17□□□□□ -0.3
LMO4P61968 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC13.17□□□□□ -0.3
LMO4P61968 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC13.17□□□□□ -0.3
LMO4P61968 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC13.17□□□□□ -0.3
LMO4P61968 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
LMO4P61968 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC13.17□□□□□ -0.3
LMO4P61968 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC13.17□□□□□ -0.3
LMO4P61968 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC13.17□□□□□ -0.3
LMO4P61968 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC13.17□□□□□ -0.3
LMO4P61968 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC13.17□□□□□ -0.3
LMO4P61968 AL158212.4-201ENST00000624062 1286 ntBASIC13.17□□□□□ -0.3
LMO4P61968 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC13.17□□□□□ -0.3
LMO4P61968 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC13.17□□□□□ -0.3
LMO4P61968 REXO1L1P-202ENST00000608646 1974 ntBASIC13.17□□□□□ -0.3
LMO4P61968 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
LMO4P61968 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
LMO4P61968 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms