Protein–RNA interactions for Protein: P57078

RIPK4, Receptor-interacting serine/threonine-protein kinase 4, humanhuman

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RIPK4P57078 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC21.11■□□□□ 0.97
RIPK4P57078 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RIPK4P57078 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC21.11■□□□□ 0.97
RIPK4P57078 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RIPK4P57078 BLK-205ENST00000529894 2017 ntTSL 5 BASIC21.11■□□□□ 0.97
RIPK4P57078 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RIPK4P57078 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC21.1■□□□□ 0.97
RIPK4P57078 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC21.1■□□□□ 0.97
RIPK4P57078 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
RIPK4P57078 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
RIPK4P57078 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
RIPK4P57078 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
RIPK4P57078 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC21.1■□□□□ 0.97
RIPK4P57078 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC21.1■□□□□ 0.97
RIPK4P57078 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
RIPK4P57078 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC21.1■□□□□ 0.97
RIPK4P57078 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
RIPK4P57078 AC009477.1-201ENST00000452936 217 ntBASIC21.1■□□□□ 0.97
RIPK4P57078 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
RIPK4P57078 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC21.1■□□□□ 0.97
RIPK4P57078 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC21.1■□□□□ 0.97
RIPK4P57078 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC21.1■□□□□ 0.97
RIPK4P57078 AC009407.1-201ENST00000568958 598 ntBASIC21.1■□□□□ 0.97
RIPK4P57078 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC21.1■□□□□ 0.97
RIPK4P57078 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC21.1■□□□□ 0.97
RIPK4P57078 AJ011932.1-201ENST00000621707 465 ntBASIC21.1■□□□□ 0.97
RIPK4P57078 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
RIPK4P57078 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC21.1■□□□□ 0.97
RIPK4P57078 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
RIPK4P57078 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
RIPK4P57078 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
RIPK4P57078 LINC02199-201ENST00000506655 2702 ntBASIC21.1■□□□□ 0.97
RIPK4P57078 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
RIPK4P57078 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
RIPK4P57078 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
RIPK4P57078 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC21.09■□□□□ 0.97
RIPK4P57078 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC21.09■□□□□ 0.97
RIPK4P57078 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
RIPK4P57078 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC21.09■□□□□ 0.97
RIPK4P57078 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
RIPK4P57078 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
RIPK4P57078 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC21.09■□□□□ 0.97
RIPK4P57078 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
RIPK4P57078 AP001282.1-201ENST00000531301 1499 ntBASIC21.09■□□□□ 0.97
RIPK4P57078 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
RIPK4P57078 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
RIPK4P57078 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
RIPK4P57078 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
RIPK4P57078 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
RIPK4P57078 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
RIPK4P57078 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
RIPK4P57078 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
RIPK4P57078 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC21.09■□□□□ 0.97
RIPK4P57078 HNRNPA1P40-201ENST00000426371 1278 ntBASIC21.09■□□□□ 0.97
RIPK4P57078 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC21.09■□□□□ 0.97
RIPK4P57078 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC21.09■□□□□ 0.97
RIPK4P57078 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC21.09■□□□□ 0.97
RIPK4P57078 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC21.09■□□□□ 0.97
RIPK4P57078 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
RIPK4P57078 AC010336.2-201ENST00000564226 506 ntBASIC21.09■□□□□ 0.97
RIPK4P57078 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC21.09■□□□□ 0.97
RIPK4P57078 RAB34-223ENST00000636154 730 ntTSL 2 BASIC21.09■□□□□ 0.97
RIPK4P57078 AL033527.5-202ENST00000641632 1098 ntBASIC21.09■□□□□ 0.97
RIPK4P57078 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
RIPK4P57078 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
RIPK4P57078 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
RIPK4P57078 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
RIPK4P57078 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
RIPK4P57078 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC21.09■□□□□ 0.97
RIPK4P57078 ZBTB45P2-201ENST00000452245 1531 ntBASIC21.09■□□□□ 0.97
RIPK4P57078 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
RIPK4P57078 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC21.08■□□□□ 0.97
RIPK4P57078 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
RIPK4P57078 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
RIPK4P57078 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
RIPK4P57078 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
RIPK4P57078 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
RIPK4P57078 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
RIPK4P57078 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
RIPK4P57078 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC21.08■□□□□ 0.97
RIPK4P57078 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC21.08■□□□□ 0.97
RIPK4P57078 KRT8P37-201ENST00000451609 1420 ntBASIC21.08■□□□□ 0.97
RIPK4P57078 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC21.08■□□□□ 0.97
RIPK4P57078 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC21.08■□□□□ 0.97
RIPK4P57078 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC21.08■□□□□ 0.97
RIPK4P57078 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC21.08■□□□□ 0.97
RIPK4P57078 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC21.08■□□□□ 0.97
RIPK4P57078 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
RIPK4P57078 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC21.08■□□□□ 0.96
RIPK4P57078 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.96
RIPK4P57078 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
RIPK4P57078 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC21.08■□□□□ 0.96
RIPK4P57078 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
RIPK4P57078 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.96
RIPK4P57078 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
RIPK4P57078 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC21.07■□□□□ 0.96
RIPK4P57078 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
RIPK4P57078 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
RIPK4P57078 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
RIPK4P57078 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms