Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
FOXA1P55317 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
FOXA1P55317 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
FOXA1P55317 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC15.67■□□□□ 0.1
FOXA1P55317 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
FOXA1P55317 AC245100.5-201ENST00000452108 331 ntBASIC15.67■□□□□ 0.1
FOXA1P55317 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC15.67■□□□□ 0.1
FOXA1P55317 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
FOXA1P55317 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC15.67■□□□□ 0.1
FOXA1P55317 AL662844.1-201ENST00000546340 181 ntBASIC15.67■□□□□ 0.1
FOXA1P55317 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC15.67■□□□□ 0.1
FOXA1P55317 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC15.67■□□□□ 0.1
FOXA1P55317 AC145285.3-201ENST00000564603 959 ntBASIC15.67■□□□□ 0.1
FOXA1P55317 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC15.67■□□□□ 0.1
FOXA1P55317 MIR4321-201ENST00000592276 80 ntBASIC15.67■□□□□ 0.1
FOXA1P55317 AL365330.1-201ENST00000607459 531 ntBASIC15.67■□□□□ 0.1
FOXA1P55317 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
FOXA1P55317 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
FOXA1P55317 TNRC18P2-201ENST00000417666 2714 ntBASIC15.67■□□□□ 0.1
FOXA1P55317 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
FOXA1P55317 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
FOXA1P55317 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC15.67■□□□□ 0.1
FOXA1P55317 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC15.67■□□□□ 0.1
FOXA1P55317 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
FOXA1P55317 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
FOXA1P55317 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC15.67■□□□□ 0.1
FOXA1P55317 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
FOXA1P55317 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
FOXA1P55317 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC15.67■□□□□ 0.1
FOXA1P55317 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
FOXA1P55317 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
FOXA1P55317 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
FOXA1P55317 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC15.67■□□□□ 0.1
FOXA1P55317 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
FOXA1P55317 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
FOXA1P55317 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
FOXA1P55317 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
FOXA1P55317 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
FOXA1P55317 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
FOXA1P55317 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
FOXA1P55317 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC15.66■□□□□ 0.1
FOXA1P55317 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
FOXA1P55317 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
FOXA1P55317 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC15.66■□□□□ 0.1
FOXA1P55317 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC15.66■□□□□ 0.1
FOXA1P55317 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
FOXA1P55317 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
FOXA1P55317 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
FOXA1P55317 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
FOXA1P55317 GPX1P2-201ENST00000429271 606 ntBASIC15.66■□□□□ 0.1
FOXA1P55317 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC15.66■□□□□ 0.1
FOXA1P55317 PENK-208ENST00000523051 772 ntTSL 5 BASIC15.66■□□□□ 0.1
FOXA1P55317 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC15.66■□□□□ 0.1
FOXA1P55317 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC15.66■□□□□ 0.1
FOXA1P55317 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC15.66■□□□□ 0.1
FOXA1P55317 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC15.66■□□□□ 0.1
FOXA1P55317 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
FOXA1P55317 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
FOXA1P55317 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC15.66■□□□□ 0.1
FOXA1P55317 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC15.66■□□□□ 0.1
FOXA1P55317 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
FOXA1P55317 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC15.66■□□□□ 0.1
FOXA1P55317 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC15.66■□□□□ 0.1
FOXA1P55317 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
FOXA1P55317 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC15.66■□□□□ 0.1
FOXA1P55317 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
FOXA1P55317 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
FOXA1P55317 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
FOXA1P55317 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC15.66■□□□□ 0.1
FOXA1P55317 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
FOXA1P55317 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC15.66■□□□□ 0.1
FOXA1P55317 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
FOXA1P55317 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
FOXA1P55317 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
FOXA1P55317 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
FOXA1P55317 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
FOXA1P55317 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
FOXA1P55317 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
FOXA1P55317 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
FOXA1P55317 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
FOXA1P55317 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
FOXA1P55317 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
FOXA1P55317 AC092127.1-201ENST00000567093 3455 ntBASIC15.65■□□□□ 0.1
FOXA1P55317 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
FOXA1P55317 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
FOXA1P55317 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
FOXA1P55317 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC15.65■□□□□ 0.1
FOXA1P55317 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC15.65■□□□□ 0.1
FOXA1P55317 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
FOXA1P55317 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
FOXA1P55317 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
FOXA1P55317 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
FOXA1P55317 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
FOXA1P55317 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
FOXA1P55317 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC15.65■□□□□ 0.1
FOXA1P55317 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC15.65■□□□□ 0.1
FOXA1P55317 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
FOXA1P55317 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC15.65■□□□□ 0.1
FOXA1P55317 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
FOXA1P55317 PRYP6-201ENST00000514804 343 ntBASIC15.65■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms