Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
SMARCA1P28370 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
SMARCA1P28370 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
SMARCA1P28370 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC18.46■□□□□ 0.55
SMARCA1P28370 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SMARCA1P28370 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SMARCA1P28370 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SMARCA1P28370 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SMARCA1P28370 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SMARCA1P28370 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC18.46■□□□□ 0.55
SMARCA1P28370 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC18.46■□□□□ 0.55
SMARCA1P28370 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC18.46■□□□□ 0.55
SMARCA1P28370 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC18.46■□□□□ 0.55
SMARCA1P28370 AC097359.3-201ENST00000603982 1210 ntBASIC18.46■□□□□ 0.55
SMARCA1P28370 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC18.46■□□□□ 0.55
SMARCA1P28370 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC18.46■□□□□ 0.55
SMARCA1P28370 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SMARCA1P28370 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
SMARCA1P28370 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
SMARCA1P28370 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
SMARCA1P28370 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC18.46■□□□□ 0.55
SMARCA1P28370 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SMARCA1P28370 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
SMARCA1P28370 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC18.46■□□□□ 0.55
SMARCA1P28370 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC18.46■□□□□ 0.55
SMARCA1P28370 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC18.46■□□□□ 0.55
SMARCA1P28370 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SMARCA1P28370 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC18.46■□□□□ 0.54
SMARCA1P28370 AC024909.3-201ENST00000611513 2257 ntBASIC18.46■□□□□ 0.54
SMARCA1P28370 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SMARCA1P28370 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
SMARCA1P28370 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
SMARCA1P28370 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SMARCA1P28370 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
SMARCA1P28370 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC18.45■□□□□ 0.54
SMARCA1P28370 PCDH8P1-201ENST00000428983 2773 ntBASIC18.45■□□□□ 0.54
SMARCA1P28370 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC18.45■□□□□ 0.54
SMARCA1P28370 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC18.45■□□□□ 0.54
SMARCA1P28370 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SMARCA1P28370 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
SMARCA1P28370 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC18.45■□□□□ 0.54
SMARCA1P28370 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SMARCA1P28370 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SMARCA1P28370 HNRNPA1P40-201ENST00000426371 1278 ntBASIC18.45■□□□□ 0.54
SMARCA1P28370 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SMARCA1P28370 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC18.45■□□□□ 0.54
SMARCA1P28370 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC18.45■□□□□ 0.54
SMARCA1P28370 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC18.45■□□□□ 0.54
SMARCA1P28370 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SMARCA1P28370 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC18.45■□□□□ 0.54
SMARCA1P28370 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC18.45■□□□□ 0.54
SMARCA1P28370 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC18.45■□□□□ 0.54
SMARCA1P28370 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC18.45■□□□□ 0.54
SMARCA1P28370 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SMARCA1P28370 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC18.44■□□□□ 0.54
SMARCA1P28370 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SMARCA1P28370 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SMARCA1P28370 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SMARCA1P28370 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
SMARCA1P28370 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
SMARCA1P28370 LRRFIP1P1-201ENST00000498774 2246 ntBASIC18.44■□□□□ 0.54
SMARCA1P28370 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SMARCA1P28370 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
SMARCA1P28370 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
SMARCA1P28370 RAC2-202ENST00000401529 569 ntTSL 4 BASIC18.44■□□□□ 0.54
SMARCA1P28370 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SMARCA1P28370 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC18.44■□□□□ 0.54
SMARCA1P28370 FAM207CP-201ENST00000443486 507 ntBASIC18.44■□□□□ 0.54
SMARCA1P28370 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
SMARCA1P28370 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC18.44■□□□□ 0.54
SMARCA1P28370 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SMARCA1P28370 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC18.44■□□□□ 0.54
SMARCA1P28370 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC18.44■□□□□ 0.54
SMARCA1P28370 REEP4-207ENST00000523293 913 ntTSL 3 BASIC18.44■□□□□ 0.54
SMARCA1P28370 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SMARCA1P28370 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
SMARCA1P28370 HNRNPUP1-201ENST00000554987 333 ntBASIC18.44■□□□□ 0.54
SMARCA1P28370 AC044860.1-202ENST00000559481 777 ntBASIC18.44■□□□□ 0.54
SMARCA1P28370 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
SMARCA1P28370 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC18.44■□□□□ 0.54
SMARCA1P28370 AC074044.1-201ENST00000609673 707 ntBASIC18.44■□□□□ 0.54
SMARCA1P28370 AC008738.7-201ENST00000609744 511 ntBASIC18.44■□□□□ 0.54
SMARCA1P28370 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
SMARCA1P28370 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SMARCA1P28370 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
SMARCA1P28370 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SMARCA1P28370 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SMARCA1P28370 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
SMARCA1P28370 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SMARCA1P28370 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC18.44■□□□□ 0.54
SMARCA1P28370 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC18.44■□□□□ 0.54
SMARCA1P28370 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC18.44■□□□□ 0.54
SMARCA1P28370 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC18.44■□□□□ 0.54
SMARCA1P28370 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SMARCA1P28370 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SMARCA1P28370 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SMARCA1P28370 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SMARCA1P28370 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SMARCA1P28370 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC18.44■□□□□ 0.54
SMARCA1P28370 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC18.44■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms